View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4278_low_7 (Length: 373)
Name: NF4278_low_7
Description: NF4278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4278_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 87 - 364
Target Start/End: Complemental strand, 35792249 - 35791982
Alignment:
| Q |
87 |
tttatatgcattggcggtgtaaattttt-acatatgcattcaataaaataatatcaagtagatattcgtacatatattttaagaactaacactgacatnn |
185 |
Q |
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| T |
35792249 |
tttatatgcattggtggtgtaaattttttacaaatgcattcaataaaataatatcaagtagatattcgtacatatattttaagaactaacataaaaa--- |
35792153 |
T |
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| Q |
186 |
nnnnnnggatcaatatatgatttgattggatgtgcgtgtaaaaatgtttagacatactaattactatatatacaaattgatctcttaaataaaatacact |
285 |
Q |
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| T |
35792152 |
-aaaaaggatcaatatatgatttgatcggatgtacgtgtaaaaatgtttacacagactc-------tatatacaaattgatctcttaaataaaatacact |
35792061 |
T |
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| Q |
286 |
agaaaaattattgtttgttaccacaaaaaggttgtttattagcacatccacttgtcaatttatagttacatagaataat |
364 |
Q |
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| T |
35792060 |
agaaaaattattgtttgttaccacaaaaaggttgtttattagcacatccacttgtcaatttatagttacatagaataat |
35791982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 35792343 - 35792248
Alignment:
| Q |
20 |
taatgaagaccgggggagtattgttggaatattcacacaaaa-tcaacctgttaaataaagctattaatttatatgcattggcggtgtaaattttt |
114 |
Q |
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| T |
35792343 |
taatgaagacagagggagtattgttggaatattcacacaaaaatcaacctgttaaataaagctattaatttatatgcattggtggtgtaaattttt |
35792248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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