View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4279-Insertion-10 (Length: 223)

Name: NF4279-Insertion-10
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4279-Insertion-10
NF4279-Insertion-10
[»] chr8 (27 HSPs)
chr8 (1-223)||(7744122-7744344)
chr8 (1-223)||(26239433-26239655)
chr8 (1-223)||(41824662-41824884)
chr8 (73-223)||(42942705-42942855)
chr8 (72-199)||(15307227-15307354)
chr8 (72-199)||(15487596-15487723)
chr8 (72-199)||(40338743-40338869)
chr8 (72-196)||(33707872-33707996)
chr8 (72-223)||(5037347-5037498)
chr8 (72-199)||(27405205-27405332)
chr8 (72-199)||(27692101-27692228)
chr8 (73-220)||(3152594-3152749)
chr8 (72-199)||(29238129-29238256)
chr8 (72-199)||(41041647-41041773)
chr8 (127-219)||(9672292-9672384)
chr8 (80-178)||(13485207-13485305)
chr8 (73-199)||(22273194-22273328)
chr8 (1-80)||(41041385-41041465)
chr8 (1-75)||(9672101-9672175)
chr8 (2-75)||(40338474-40338547)
chr8 (85-214)||(11720451-11720580)
chr8 (3-75)||(15307542-15307614)
chr8 (3-75)||(15487911-15487983)
chr8 (3-75)||(29238444-29238516)
chr8 (3-75)||(27404946-27405018)
chr8 (82-190)||(24285717-24285825)
chr8 (73-146)||(11790194-11790267)
[»] chr4 (23 HSPs)
chr4 (1-223)||(48645738-48645960)
chr4 (10-223)||(54387052-54387265)
chr4 (73-223)||(2692349-2692499)
chr4 (79-223)||(35402737-35402881)
chr4 (72-223)||(49524043-49524194)
chr4 (72-199)||(834117-834244)
chr4 (72-199)||(5438715-5438842)
chr4 (72-199)||(41760789-41760916)
chr4 (72-199)||(43520373-43520500)
chr4 (72-199)||(42981555-42981682)
chr4 (72-193)||(11254992-11255113)
chr4 (114-223)||(11640966-11641075)
chr4 (72-221)||(51012840-51012989)
chr4 (1-75)||(11254731-11254805)
chr4 (1-75)||(41760400-41760474)
chr4 (3-75)||(51013177-51013249)
chr4 (1-75)||(42981845-42981919)
chr4 (5-75)||(35402475-35402542)
chr4 (73-129)||(11641094-11641150)
chr4 (3-75)||(833959-834034)
chr4 (10-75)||(5438925-5438993)
chr4 (1-75)||(11641339-11641413)
chr4 (1-75)||(2692086-2692160)
[»] chr6 (17 HSPs)
chr6 (1-223)||(7050670-7050892)
chr6 (1-223)||(10569311-10569533)
chr6 (1-223)||(6902061-6902283)
chr6 (72-199)||(7372045-7372172)
chr6 (72-222)||(32517783-32517933)
chr6 (73-197)||(33267940-33268065)
chr6 (72-223)||(20524298-20524449)
chr6 (72-221)||(32438142-32438291)
chr6 (72-199)||(11356135-11356270)
chr6 (72-199)||(18644208-18644343)
chr6 (1-80)||(7371784-7371863)
chr6 (1-75)||(11356445-11356519)
chr6 (1-75)||(20524677-20524751)
chr6 (1-80)||(9399362-9399442)
chr6 (3-75)||(32437884-32437956)
chr6 (3-75)||(18644531-18644603)
chr6 (73-117)||(9399135-9399179)
[»] chr3 (34 HSPs)
chr3 (1-223)||(51685522-51685744)
chr3 (17-223)||(48829831-48830037)
chr3 (73-219)||(610529-610675)
chr3 (73-220)||(46113401-46113548)
chr3 (108-223)||(42280419-42280534)
chr3 (4-112)||(42281755-42281863)
chr3 (72-199)||(17516264-17516391)
chr3 (72-199)||(30599270-30599396)
chr3 (73-223)||(23292232-23292382)
chr3 (72-221)||(53188762-53188911)
chr3 (72-199)||(46198674-46198801)
chr3 (72-199)||(44275280-44275405)
chr3 (72-199)||(2661169-2661296)
chr3 (72-223)||(27898177-27898327)
chr3 (72-196)||(21349652-21349776)
chr3 (72-199)||(43766076-43766203)
chr3 (79-222)||(2377928-2378065)
chr3 (72-195)||(44795158-44795281)
chr3 (1-75)||(21349964-21350038)
chr3 (1-75)||(46198989-46199063)
chr3 (72-221)||(54899366-54899523)
chr3 (1-75)||(30599008-30599082)
chr3 (3-75)||(53188502-53188574)
chr3 (10-80)||(2378253-2378324)
chr3 (4-75)||(27897918-27897989)
chr3 (83-199)||(2225237-2225361)
chr3 (134-220)||(24845798-24845884)
chr3 (1-75)||(44275018-44275092)
chr3 (3-75)||(35904551-35904623)
chr3 (1-75)||(43766391-43766465)
chr3 (73-198)||(13466115-13466240)
chr3 (134-221)||(35904849-35904936)
chr3 (4-75)||(13466455-13466526)
chr3 (72-111)||(35904811-35904850)
[»] chr1 (23 HSPs)
chr1 (5-223)||(52642631-52642849)
chr1 (73-223)||(15105357-15105507)
chr1 (72-223)||(6817778-6817929)
chr1 (73-223)||(3012516-3012666)
chr1 (72-222)||(37345248-37345398)
chr1 (72-223)||(45045565-45045716)
chr1 (72-223)||(50555165-50555315)
chr1 (72-199)||(46582650-46582777)
chr1 (72-221)||(27088201-27088348)
chr1 (73-223)||(51895228-51895378)
chr1 (72-223)||(25277429-25277588)
chr1 (72-221)||(26224607-26224764)
chr1 (72-199)||(31237576-31237695)
chr1 (1-80)||(37087473-37087553)
chr1 (4-75)||(50554906-50554977)
chr1 (1-75)||(15105696-15105770)
chr1 (3-80)||(33599945-33600022)
chr1 (72-199)||(33600206-33600341)
chr1 (123-199)||(2870534-2870610)
chr1 (3-75)||(26224347-26224419)
chr1 (3-75)||(27088536-27088608)
chr1 (1-66)||(6817601-6817666)
chr1 (82-174)||(42558943-42559035)
[»] chr7 (36 HSPs)
chr7 (1-223)||(38550245-38550483)
chr7 (72-223)||(22154811-22154962)
chr7 (72-223)||(22210726-22210877)
chr7 (72-223)||(6604436-6604587)
chr7 (72-223)||(39858305-39858455)
chr7 (72-196)||(23905314-23905438)
chr7 (72-223)||(35692413-35692563)
chr7 (72-199)||(38473186-38473313)
chr7 (73-223)||(47385270-47385428)
chr7 (72-199)||(27665108-27665235)
chr7 (80-223)||(45360248-45360390)
chr7 (73-223)||(37114591-37114741)
chr7 (126-223)||(37792150-37792247)
chr7 (72-223)||(34776024-34776174)
chr7 (72-199)||(29995578-29995705)
chr7 (72-199)||(46438572-46438699)
chr7 (106-223)||(13168994-13169111)
chr7 (72-191)||(24227483-24227602)
chr7 (1-80)||(38472925-38473004)
chr7 (136-223)||(48851450-48851537)
chr7 (1-75)||(48851271-48851345)
chr7 (3-75)||(77307-77379)
chr7 (4-80)||(34775766-34775842)
chr7 (12-75)||(45360586-45360649)
chr7 (1-75)||(24227221-24227295)
chr7 (1-75)||(46438309-46438383)
chr7 (1-69)||(22155156-22155224)
chr7 (1-69)||(22211071-22211139)
chr7 (1-80)||(47385007-47385087)
chr7 (1-75)||(35692150-35692224)
chr7 (87-214)||(23168542-23168669)
chr7 (1-66)||(6604699-6604764)
chr7 (73-137)||(48310945-48311009)
chr7 (149-220)||(48310879-48310950)
chr7 (1-75)||(48311199-48311273)
chr7 (73-146)||(7402878-7402951)
[»] scaffold0004 (2 HSPs)
scaffold0004 (73-223)||(107649-107798)
scaffold0004 (1-75)||(107387-107461)
[»] chr5 (20 HSPs)
chr5 (72-223)||(30464699-30464850)
chr5 (92-223)||(41494524-41494655)
chr5 (73-223)||(32134897-32135047)
chr5 (72-223)||(12800839-12800989)
chr5 (72-199)||(42472545-42472672)
chr5 (72-221)||(21841914-21842063)
chr5 (72-223)||(2180685-2180833)
chr5 (72-223)||(12738016-12738166)
chr5 (73-223)||(8540582-8540732)
chr5 (1-80)||(34328167-34328247)
chr5 (72-159)||(28821369-28821456)
chr5 (72-199)||(2853330-2853457)
chr5 (3-80)||(17575901-17575978)
chr5 (1-75)||(18624115-18624189)
chr5 (1-75)||(28821644-28821718)
chr5 (3-75)||(17575186-17575258)
chr5 (3-75)||(17577217-17577289)
chr5 (3-80)||(42472285-42472363)
chr5 (4-75)||(2181021-2181092)
chr5 (3-80)||(21842247-21842324)
[»] chr2 (26 HSPs)
chr2 (1-151)||(19581890-19582039)
chr2 (72-208)||(6798451-6798587)
chr2 (72-196)||(39456116-39456240)
chr2 (72-223)||(19907342-19907492)
chr2 (72-199)||(6784350-6784477)
chr2 (72-199)||(44708884-44709010)
chr2 (72-199)||(34401245-34401372)
chr2 (72-221)||(16763878-16764027)
chr2 (73-223)||(40561155-40561305)
chr2 (72-199)||(2767868-2767995)
chr2 (72-199)||(17697161-17697288)
chr2 (72-199)||(14388156-14388291)
chr2 (72-199)||(24206593-24206728)
chr2 (1-79)||(6798770-6798849)
chr2 (1-75)||(2768183-2768257)
chr2 (4-75)||(39663868-39663939)
chr2 (2-75)||(42518231-42518302)
chr2 (1-75)||(44708622-44708696)
chr2 (3-75)||(6784090-6784162)
chr2 (1-75)||(34400983-34401057)
chr2 (3-75)||(24206333-24206405)
chr2 (82-199)||(20941646-20941763)
chr2 (1-75)||(17697476-17697550)
chr2 (30-75)||(14387923-14387968)
chr2 (72-107)||(42518490-42518525)
chr2 (86-199)||(26581643-26581756)
[»] scaffold0564 (1 HSPs)
scaffold0564 (72-223)||(9180-9331)
[»] scaffold0920 (1 HSPs)
scaffold0920 (73-223)||(1581-1728)
[»] scaffold0345 (3 HSPs)
scaffold0345 (123-199)||(488-564)
scaffold0345 (1-75)||(806-880)
scaffold0345 (72-117)||(586-631)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7744122 - 7744344
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7744122 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgtt 7744221  T
Q  101 attgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  7744222 attgtattgtgccaagtctgtataatgttgtaatgaaaagaggctgtcaatgaatgaatttaacccttctgtcaaaaaatttcaatcaaattggttcttc 7744321  T
Q  201 tattgtatgtctatccatcatat 223  Q
    |||||||||||||||||||||||    
T  7744322 tattgtatgtctatccatcatat 7744344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26239433 - 26239655
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgtt 100  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26239433 tgtgaatggtttgttaaagtaatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgtt 26239532  T
Q  101 attgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttc 200  Q
    ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  26239533 attgtattgtatcaagtctgtgtaatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaaatttcaatccaattggtccttc 26239632  T
Q  201 tattgtatgtctatccatcatat 223  Q
    |||||||||||||||||||||||    
T  26239633 tattgtatgtctatccatcatat 26239655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41824662 - 41824884
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgtt 100  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41824662 tgtgaatggtttgttaaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaagtttttgtgtgattgagttgtttaaaatgtt 41824761  T
Q  101 attgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttc 200  Q
    |||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||| |||    
T  41824762 attgtattgtgccaagcctgtgtaatgttgtaatgaaaagaggttgccaatgaatgaatttaacccttctgtcaaaaaaattcaatcaaattggtcattc 41824861  T
Q  201 tattgtatgtctatccatcatat 223  Q
    |||||||||||||||||||||||    
T  41824862 tattgtatgtctatccatcatat 41824884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 73 - 223
Target Start/End: Complemental strand, 42942855 - 42942705
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgt 172  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  42942855 tttgtttgattgagttgtttaaaatgttattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctgt 42942756  T
Q  173 caaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    |||||| ||||||||||||||||||||  ||| ||||  ||||||||||||    
T  42942755 caaaaaatttcaatcaaattggtccttgaattatatgcatatccatcatat 42942705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 15307354 - 15307227
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  15307354 ttttgtttgattgagttgtttaaaatgttattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 15307255  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    |||||||  |||||||| ||||||||||    
T  15307254 tcaaaaaaattcaatcacattggtcctt 15307227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 15487723 - 15487596
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  15487723 ttttgtttgattgagttgtttaaaatgttattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 15487624  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    |||||||  |||||||| ||||||||||    
T  15487623 tcaaaaaaattcaatcacattggtcctt 15487596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 40338743 - 40338869
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  40338743 ttttgtttgattgagttgtttaaaatgctattgtattgtgccaagtcc-tgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 40338841  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||| ||||||||||||||||||||    
T  40338842 tcaaaaaatttcaatcaaattggtcctt 40338869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 72 - 196
Target Start/End: Original strand, 33707872 - 33707996
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||   |||| |||||    
T  33707872 ttttgtttgattgagttgtttaaaatgatattgtattgtgccaagtctatgtaatgttgtaatgaaaagaggttgtcaatgaatgaaccaaacctttctg 33707971  T
Q  172 tcaaaaattttcaatcaaattggtc 196  Q
    ||||||  |||||||||||||||||    
T  33707972 tcaaaatatttcaatcaaattggtc 33707996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 5037498 - 5037347
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||| ||||||  | |||||||||||||||||||||||||||||||||||||  ||||||| ||    
T  5037498 ttttgtttgattgagttgtttaaaatgctattgtattgtgtcaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacccttatg 5037399  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||| |  |||||||||||||||||||  ||| ||||  ||||||||||||    
T  5037398 tcaaagaaattcaatcaaattggtccttgaattatatgcatatccatcatat 5037347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 27405205 - 27405332
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||  | ||||||||||||||||| |||||||||||||||||||  |||| |||||    
T  27405205 ttttgtttgattgagttgtttaaaatgctattgtattgtgccaagtccatgtaatgttgtaatgaaaaaaggttgtcaatgaatgaatcaaacctttctg 27405304  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    |||||||| |||||||| ||||||||||    
T  27405305 tcaaaaatattcaatcacattggtcctt 27405332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 27692228 - 27692101
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||||||||||| |||||| |||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||   |||| |||||    
T  27692228 ttttgtttgattgagttgttaaaaatgatattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaaccaaacctttctg 27692129  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||  ||||||||||||||||||||    
T  27692128 tcaaaatatttcaatcaaattggtcctt 27692101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 73 - 220
Target Start/End: Original strand, 3152594 - 3152749
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaat--------gaaaagaggttgtcaatgaatgaatttaac 164  Q
    ||||| ||||| ||| ||||||||||||||| ||||||| ||||| ||| ||||||||||||        ||||||| |||||||||||||||||| |||    
T  3152594 tttgtttgattaagtcgtttaaaatgttattttattgtgtcaagtgtgtgtaatgttgtaatgttataatgaaaagaagttgtcaatgaatgaattcaac 3152693  T
Q  165 ccttctgtcaaaaattttcaatcaaattggtccttctattgtatgtctatccatca 220  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||    
T  3152694 ccttctgtcaaaaaaattcaatcaaattggttcttctattgtatgtctatccatca 3152749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 29238256 - 29238129
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| || ||||||| ||||||||| |||||||||||| ||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  29238256 ttttgtttggttgagttatttaaaatgctattgtattgtgtcaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 29238157  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    |||||||  |||||||| ||||||||||    
T  29238156 tcaaaaaaattcaatcacattggtcctt 29238129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 41041647 - 41041773
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| ||||||||| |||||||||  | |||||||||||||||||||||||||||||||||||||  |||  |||||    
T  41041647 ttttgtttgattgagttgtttaaaatgctattgtattttgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacatttctg 41041746  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    || ||||  |||||||||||||||||||    
T  41041747 tccaaaa-attcaatcaaattggtcctt 41041773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 9672292 - 9672384
Alignment:
Q  127 gttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttctattgtatgtctatccatc 219  Q
    ||||||||||||||| |||||||||||||||||  |||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||    
T  9672292 gttgtaatgaaaagatgttgtcaatgaatgaatccaacccttctgtcgaaaaaattcaatcaaattggtccttctattgtatgtctatccatc 9672384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 13485207 - 13485305
Alignment:
Q  80 gattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaa 178  Q
    ||||||||||||||||||| ||||||||||| |||||||  | |||||||||||||||||||||||||||||||||||||  |||| ||||||||||||    
T  13485207 gattgagttgtttaaaatgctattgtattgtaccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctgtcaaaaa 13485305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 22273328 - 22273194
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtc--tgta------taatgttgtaatgaaaagaggttgtcaatgaatgaatttaac 164  Q
    ||||| |||||||||||||||||||| |||||||||||| ||||||  ||||      ||||||||||||||||||||||||||||| |||||||  |||    
T  22273328 tttgtttgattgagttgtttaaaatgctattgtattgtgtcaagtccatgtaatgttgtaatgttgtaatgaaaagaggttgtcaataaatgaatcaaac 22273229  T
Q  165 ccttctgtcaaaaattttcaatcaaattggtcctt 199  Q
    | |||| ||||||| ||||||||||||||||||||    
T  22273228 ctttctatcaaaaaatttcaatcaaattggtcctt 22273194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 41041385 - 41041465
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgt-aaatttttgtgtg 80  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  41041385 tgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgacggtgaaaattgtaaaatttttgtgtg 41041465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 9672101 - 9672175
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9672101 tgtgaatggtttgtttaaatagtactgattttgtcttttgattgtataagatgatggtgaaaattgtaaattttt 9672175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 40338474 - 40338547
Alignment:
Q  2 gtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  40338474 gtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatggtaaaaattgtaatttttt 40338547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 214
Target Start/End: Original strand, 11720451 - 11720580
Alignment:
Q  85 agttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttca 184  Q
    |||||||||| ||| || |||||||||| || ||||| |||| |||||||||||||||||||  |||||||||||  |||| || ||||||||  ||||     
T  11720451 agttgtttaacatgctactgtattgtgctaattctgtgtaatattgtaatgaaaagaggttgaaaatgaatgaatgcaaccattttgtcaaaatctttcc 11720550  T
Q  185 atcaaattggtccttctattgtatgtctat 214  Q
    |||||||||||||||  ||||| |||||||    
T  11720551 atcaaattggtccttaaattgtttgtctat 11720580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 15307614 - 15307542
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  15307614 tgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaatttttt 15307542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 15487983 - 15487911
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  15487983 tgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaatttttt 15487911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 29238516 - 29238444
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  29238516 tgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaatttttt 29238444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 27404946 - 27405018
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  27404946 tgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaactgtaatttttt 27405018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 190
Target Start/End: Complemental strand, 24285825 - 24285717
Alignment:
Q  82 ttgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattt 181  Q
    ||||||||||||| ||| ||||||||||| | | || ||| || |||||||||||||||| ||||   ||||||||||  |||| || ||||||||  ||    
T  24285825 ttgagttgtttaacatgctattgtattgtactaggtatgtgtattgttgtaatgaaaagatgttgaagatgaatgaatgcaacctttatgtcaaaatatt 24285726  T
Q  182 tcaatcaaa 190  Q
    || ||||||    
T  24285725 tccatcaaa 24285717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 11790267 - 11790194
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttg 146  Q
    ||||| || ||| ||||||||| |||| |||||||||| | | || ||| |||||||||||| |||||||||||    
T  11790267 tttgtttgtttgggttgtttaacatgtcattgtattgtactaggtgtgtgtaatgttgtaatcaaaagaggttg 11790194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 48645738 - 48645960
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgtt 100  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48645738 tgtgaatgatttgttaaaatagtactgattttgccttttgattgtataggatgatggtgaaaattgtaaatttttgtttgattgagttgtttaaaatgtt 48645837  T
Q  101 attgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttc 200  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  48645838 attgtattgtgccaagtctatgtaatgttgtaatgaaaagaggttgtcaataaatgaatttaacccttctgtcaaaaaatttcaatcaaattggtccttc 48645937  T
Q  201 tattgtatgtctatccatcatat 223  Q
    |||||||||||||||||||||||    
T  48645938 tattgtatgtctatccatcatat 48645960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 54387265 - 54387052
Alignment:
Q  10 tttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgttattgtattg 109  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54387265 tttgttaaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgttattgtattg 54387166  T
Q  110 tgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttctattgtatg 209  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  54387165 tgccaagtctgtgtaatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaaatttcaatcaaattggtccttcgattgtatg 54387066  T
Q  210 tctatccatcatat 223  Q
    ||| ||||||||||    
T  54387065 tctctccatcatat 54387052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 2692349 - 2692499
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgt 172  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| ||||||||| || ||||||||    
T  2692349 tttgtttgattaagttgtttaaaatgttattgtattgtgccaagtctctgtaatgttgtaattaaaagaggttgtcaacgaatgaattcaatccttctgt 2692448  T
Q  173 caaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  2692449 caaaaaatttccatcaaattggtccttctattgtatgtctatccatcatat 2692499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 35402737 - 35402881
Alignment:
Q  79 tgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaa 178  Q
    |||||||||||||||||||| ||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  35402737 tgattgagttgtttaaaatgctattgtactgtgccaagtccgtgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacccttatgtcaaaaa 35402836  T
Q  179 ttttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
     |||||||||||||||| |||  ||| ||||  ||||||||||||    
T  35402837 atttcaatcaaattggttcttgaattatatgcatatccatcatat 35402881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 49524194 - 49524043
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||   | |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  49524194 ttttgtttgattgagttgtttaaaatattattgtattgtgccaagttcatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacccttctg 49524095  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||  ||||||||||||||||| ||  ||| ||||  ||||||||||||    
T  49524094 tcaaaatatttcaatcaaattggtcattgaattatatgcatatccatcatat 49524043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 834117 - 834244
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||  | ||||||||||||||||| |||||||||||||||||||  |||| |||||    
T  834117 ttttgtttgattgagttgtttaaaatgctattgtattgtgccaagtccatgtaatgttgtaatgaaaaaaggttgtcaatgaatgaatcaaacctttctg 834216  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    |||||||| |||||||| ||||||||||    
T  834217 tcaaaaatattcaatcacattggtcctt 834244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 5438842 - 5438715
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||  | ||||||||||||||||| |||||||||||||||||||  |||| |||||    
T  5438842 ttttgtttgattgagttgtttaaaatgctattgtattgtgccaagtccatgtaatgttgtaatgaaaaaaggttgtcaatgaatgaatcaaacctttctg 5438743  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    |||||||| |||||||| ||||||||||    
T  5438742 tcaaaaatattcaatcacattggtcctt 5438715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 41760789 - 41760916
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||||||||||| |||||| |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  41760789 ttttgtttgattgagttgttgaaaatgctattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 41760888  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
     |||||| ||||||||||||||||||||    
T  41760889 gcaaaaaatttcaatcaaattggtcctt 41760916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 43520500 - 43520373
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||   |||| |||||    
T  43520500 ttttgtttgattgagttgtttaaaatgatattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaaccaaacctttctg 43520401  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||  ||||||||||||||||||||    
T  43520400 tcaaaatatttcaatcaaattggtcctt 43520373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 42981682 - 42981555
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| | |||||||||||||||||||||||||||||||||||||   | || ||||||||||||||||||||||| ||||||||||  |||| |||||    
T  42981682 ttttgtttcattgagttgtttaaaatgttattgtattgtgccaagttcatgtattgttgtaatgaaaagaggttgtcgatgaatgaatcaaacctttctg 42981583  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||| ||||||||||||||||||||    
T  42981582 tcaaaaaatttcaatcaaattggtcctt 42981555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 11254992 - 11255113
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| || ||    
T  11254992 ttttgtttgattgagttgtttaaaatgctattatattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttatg 11255091  T
Q  172 tcaaaaattttcaatcaaattg 193  Q
    ||||||| ||||||||||||||    
T  11255092 tcaaaaaatttcaatcaaattg 11255113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 11641075 - 11640966
Alignment:
Q  114 aagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttctattgtatgtcta 213  Q
    |||| ||| ||||||||||| ||||||| |||||||||||||||||| |||| |||||||||||  |||| |||||||||||||||||||||||||||||    
T  11641075 aagtttgtgtaatgttgtaaagaaaagatgttgtcaatgaatgaattcaaccattctgtcaaaatatttccatcaaattggtccttctattgtatgtcta 11640976  T
Q  214 tccatcatat 223  Q
    ||||||||||    
T  11640975 tccatcatat 11640966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 51012989 - 51012840
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||| || ||||||||||||| |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| ||||     
T  51012989 ttttgtttgactgggttgtttaaaatgctattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttcta 51012890  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcat 221  Q
    |||||||  |||||||| ||||||||||  ||| ||||  ||||||||||    
T  51012889 tcaaaaaaattcaatcacattggtccttgaattatatgcatatccatcat 51012840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 11254731 - 11254805
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11254731 tgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 11254805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 41760400 - 41760474
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41760400 tgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 41760474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 51013249 - 51013177
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  51013249 tgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaaattttt 51013177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 42981919 - 42981845
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||||||||| || ||||| ||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||    
T  42981919 tgtgaatgatttatttaaatagtactgattttgccttttgattgtacaggatgaaggtaaaaattgtaaattttt 42981845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 35402475 - 35402542
Alignment:
Q  5 aatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||| |||||| ||||| ||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  35402475 aatggtttgtttaaatagtactgattttgtcttttgat---ataggatgatggtgaaaattgtaaattttt 35402542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 11641150 - 11641094
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgtt 129  Q
    ||||| |||||||||||||||||||||||||||||||||  |||||||| |||||||    
T  11641150 tttgtttgattgagttgtttaaaatgttattgtattgtgaaaagtctgtgtaatgtt 11641094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 833959 - 834034
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttt---tgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||| |||||| |||| |||||||||||||||||   ||||||||||||||||| ||||||| ||||| |||||    
T  833959 tgaatgttttgtttaaattatactgattttgtcttttgatgattgtataggatgattgtgaaaactgtaatttttt 834034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 5438993 - 5438925
Alignment:
Q  10 tttgttaaaataatactgattttgtcttttgat---tgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||| |||| |||||||||||||||||||||   ||||||||||||| ||||||| ||||| |||||    
T  5438993 tttgtttaaattatactgattttgtcttttgatgattgtataggatgattgtgaaaactgtaatttttt 5438925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 11641413 - 11641339
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||||| ||| || ||||  |||||||||||  ||||  |||||||||||||||||||||||||| |||||||    
T  11641413 tgtgaatggtttttttaaattgtactgattttgaattttctttgtataggatgatggtgaaaattgtcaattttt 11641339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 2692086 - 2692160
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||||| |||||| ||||  |||||||||||  ||||  |||||||||| || |||||||||||| |||||||    
T  2692086 tgtgaatggtttgtttaaattgtactgattttgaattttctttgtataggacgacggtgaaaattgtcaattttt 2692160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7050892 - 7050670
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgtt 100  Q
    |||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7050892 tgtgaatggtttgttaaaatagtattgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtttgattgagttgtttaaaatgtt 7050793  T
Q  101 attgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttc 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||  ||||||||||||||||||||    
T  7050792 attgtattgtgccaagtctgtgtaatgttgtaatgaaaagaggttgtcaatggatgaatttaacccttttgtcaaaaaaattcaatcaaattggtccttc 7050693  T
Q  201 tattgtatgtctatccatcatat 223  Q
    |||||||||||||||||||||||    
T  7050692 tattgtatgtctatccatcatat 7050670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10569533 - 10569311
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgtt 100  Q
    |||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10569533 tgtgaatggtttgttaaaatagtactgattttgtcttttgattgtacaggatgatggtgaaaattgtaaatttttgtttgattgagttgtttaaaatgtt 10569434  T
Q  101 attgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttc 200  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  10569433 attgtattgtgccaagtctatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctatcaaaaaatttcaatcaaattgatccttc 10569334  T
Q  201 tattgtatgtctatccatcatat 223  Q
    |||||||||||||||||||||||    
T  10569333 tattgtatgtctatccatcatat 10569311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6902283 - 6902061
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgtt 100  Q
    |||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  6902283 tgtgaatggtttgttaaaatagaactgattttgtcttttgattgtataggatgatggtgaaatttgtaaatttttgtgtgattgagttgtttaaaaagtt 6902184  T
Q  101 attgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttc 200  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  6902183 attgtattgtgtcaagtctgcgtaatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaaaattcaatcaaattggtccttc 6902084  T
Q  201 tattgtatgtctatccatcatat 223  Q
    |||||||||||||||||||||||    
T  6902083 tattgtatgtctatccatcatat 6902061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 7372045 - 7372172
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  7372045 ttttgtttgattgagttgtttaaaatggtattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 7372144  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||| | ||||||||||||||||||    
T  7372145 tcaaaaaatatcaatcaaattggtcctt 7372172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 32517933 - 32517783
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||  | ||||||||||||||||||||||||||||||| ||||   ||||||| ||    
T  32517933 ttttgtttgattgagttgtttaaaatgttattgtattgtgtcaagtccatgtaatgttgtaatgaaaagaggttgtcaatgactgaaccaaacccttatg 32517834  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcata 222  Q
    |||||||  |||||||||||||||||||| ||| ||||  |||||||||||    
T  32517833 tcaaaaaaattcaatcaaattggtccttcaattatatgcatatccatcata 32517783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 33267940 - 33268065
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgta-taatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||     
T  33267940 tttgtttgaatgagctgtttaaaatgttattgtattgtgccaagtctgttgtaatgttgtaatgaaaagaggttgtcaatgaatgaattcaacccttctc 33268039  T
Q  172 tcaaaaattttcaatcaaattggtcc 197  Q
    ||||||| |||||||  |||||||||    
T  33268040 tcaaaaaatttcaattgaattggtcc 33268065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 20524449 - 20524298
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| | |||||||||||||||||| ||||||||||||||||||   | |||||||||||||||||||||||||||||||||||||  |||| || ||    
T  20524449 ttttgttttattgagttgtttaaaatgctattgtattgtgccaagttcatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttatg 20524350  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    | |||||  |||||||||||||||||||  ||| ||| | ||||||||||||    
T  20524349 taaaaaaaattcaatcaaattggtccttgaattatatatgtatccatcatat 20524298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 32438142 - 32438291
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||| |||||||||||||||| ||||| |||||||||||||  | |||||||||||||||||||| ||||||||||||||||  |||| |||||    
T  32438142 ttttgtttgactgagttgtttaaaatgctattgcattgtgccaagtccatgtaatgttgtaatgaaaagagattgtcaatgaatgaatcaaacctttctg 32438241  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcat 221  Q
    |||||||  |||||||| ||||||||||  ||| ||||  ||||||||||    
T  32438242 tcaaaaaaattcaatcatattggtcctttaattatatgcatatccatcat 32438291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 11356270 - 11356135
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtc--tgta------taatgttgtaatgaaaagaggttgtcaatgaatgaatttaa 163  Q
    |||||| |||||||||||||||||||| |||| |||||||||||||   ||||      |||||||||||||||||||||| ||||||||||||||  ||    
T  11356270 ttttgtttgattgagttgtttaaaatgctattctattgtgccaagttcatgtaatgttgtaatgttgtaatgaaaagaggtggtcaatgaatgaatcaaa 11356171  T
Q  164 cccttctgtcaaaaattttcaatcaaattggtcctt 199  Q
    ||||| ||||||||| ||||||||||||||||||||    
T  11356170 cccttatgtcaaaaagtttcaatcaaattggtcctt 11356135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 18644343 - 18644208
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatg--------aaaagaggttgtcaatgaatgaatttaa 163  Q
    |||||| ||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||        ||||||| ||||||||||||||||  ||    
T  18644343 ttttgtttgactgagttgtttaaaatgctattgtattgtgccaagtctgtgtaatgttgtaatgttgtaatgaaaagagattgtcaatgaatgaatcaaa 18644244  T
Q  164 cccttctgtcaaaaattttcaatcaaattggtcctt 199  Q
    || ||||||||||||  |||||||| ||||||||||    
T  18644243 cctttctgtcaaaaaaattcaatcacattggtcctt 18644208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 7371784 - 7371863
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtg 80  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||    
T  7371784 tgtgaatgatttgtttaaatagtactgattttgtcttttgattgtatagaatgatggtgaaaattgtaatattttgtgtg 7371863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 11356519 - 11356445
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||||| |||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11356519 tgtgaatggtttgtttaaatagtacttattttgtcttttgattgtatatgatgatggtgaaaattgtaaattttt 11356445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 20524751 - 20524677
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||||||||||| ||||| |||  |||||||||| || ||||||||||||||||||||||||||||||||||    
T  20524751 tgtgaatgatttgtttaaatagtacaaattttgtcttctgcttgtataggatgatggtgaaaattgtaaattttt 20524677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9399442 - 9399362
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaat-ttttgtgtg 80  Q
    |||||||| |||||| ||||| |||| |||||||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  9399442 tgtgaatggtttgtttaaatagtactaattttgtcttttgattgtataggacgatggtgaaaattataaatcttttgtgtg 9399362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 32437884 - 32437956
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  32437884 tgaatgttttgtttaaattatactgattttgtcttttgattgtataggataattttgaaaattgtaaattttt 32437956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 18644603 - 18644531
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||| ||| || ||||||||||||| |||||    
T  18644603 tgaatgttttgtttaaattatactgattttgtcttttgattgtataagataattgtgaaaattgtaatttttt 18644531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 9399179 - 9399135
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagt 117  Q
    ||||| || |||||||||||| ||||||||| |||||||||||||    
T  9399179 tttgtttgtttgagttgtttagaatgttattttattgtgccaagt 9399135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 51685744 - 51685522
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgtt 100  Q
    |||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  51685744 tgtgaatggtttgttaaaatagtaccgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttgaaatgtt 51685645  T
Q  101 attgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttc 200  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  51685644 attgtattgtgtcaagtctgtgtaatgttgtaatgaaaagaggttgtcaatgaatgaatttaacctttctgtcaaaaaatttcaatcaaattggtccttc 51685545  T
Q  201 tattgtatgtctatccatcatat 223  Q
    ||||||||||||||| |||||||    
T  51685544 tattgtatgtctatcgatcatat 51685522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 48829831 - 48830037
Alignment:
Q  17 aaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgttattgtattgtgccaag 116  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48829831 aaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtttgattgagttgtttaaaatgttattgtattgtgccaag 48829930  T
Q  117 tctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttctattgtatgtctatcc 216  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||    
T  48829931 tctgtgtaatgttgtaatgaaaagtggttgtcaatgaatgaatttaacccttatgtcaaaaaaattcaatcaaattggtccttctattgtatgtctatcc 48830030  T
Q  217 atcatat 223  Q
    |||||||    
T  48830031 atcatat 48830037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 73 - 219
Target Start/End: Complemental strand, 610675 - 610529
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgt 172  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  610675 tttgtttgattgagttgtttaaaatgttattgtattgtgccaagtatgtgtaatgttgtaatgaaaagaggttgtcaatgaatgaattcaacccttctgt 610576  T
Q  173 caaaaattttcaatcaaattggtccttctattgtatgtctatccatc 219  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||    
T  610575 caaaaaaattcaatcaaattggtccttctattgtatgtctatccatc 610529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 73 - 220
Target Start/End: Complemental strand, 46113548 - 46113401
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgt 172  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||  |||||||||||    
T  46113548 tttgtttgattgagttgtttaaaatgttattgtattgtgtcaagtctgtgtaatgttgtaatgaaaagaggttgtcaaggaatgaatccaacccttctgt 46113449  T
Q  173 caaaaattttcaatcaaattggtccttctattgtatgtctatccatca 220  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||    
T  46113448 caaaaaatttcaatcaaattggtccttctattgtatgtttatccatca 46113401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 42280534 - 42280419
Alignment:
Q  108 tgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttctattgta 207  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42280534 tgtgccaagtttgtgtaatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaaatttcaatcaaattggtccttctattgta 42280435  T
Q  208 tgtctatccatcatat 223  Q
    ||||||||||||||||    
T  42280434 tgtctatccatcatat 42280419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 42281863 - 42281755
Alignment:
Q  4 gaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgttatt 103  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  42281863 gaatggtttgttaaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttacgtgattgagttctttaaaatgttatt 42281764  T
Q  104 gtattgtgc 112  Q
    |||||||||    
T  42281763 gtattgtgc 42281755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 17516391 - 17516264
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||||||| ||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  17516391 ttttgtttgattgagttgtttaaaatgctattgtattgtgccaattccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 17516292  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||| ||||||||||||||||||||    
T  17516291 tcaaaaaatttcaatcaaattggtcctt 17516264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 30599270 - 30599396
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  30599270 ttttgtttcattgagttgtttaaaatgttattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 30599369  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||| ||||||||||||||||||||    
T  30599370 tcaaaaa-tttcaatcaaattggtcctt 30599396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 23292232 - 23292382
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgt 172  Q
    ||||| |||||||||||||||||||| |||||||||||| ||||||  ||||||||||||||||||| |||||||||||||||||||  |||  ||||||    
T  23292232 tttgtttgattgagttgtttaaaatgctattgtattgtgacaagtccatataatgttgtaatgaaaataggttgtcaatgaatgaatcaaacttttctgt 23292331  T
Q  173 caaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    |||||| |||||||||||||| |||||  ||| ||||  ||||||||||||    
T  23292332 caaaaaatttcaatcaaattgatccttgaattatatgcatatccatcatat 23292382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 53188762 - 53188911
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||  | ||||||||||||||||| |||||||||||||||||||  |||| |||||    
T  53188762 ttttgtttgactgagttgtttaaaatgttattgtattgtgccaagtccatgtaatgttgtaatgaaaataggttgtcaatgaatgaatgaaacctttctg 53188861  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcat 221  Q
    |||||||  |||||||| ||||||||||  ||| ||||  ||||||||||    
T  53188862 tcaaaaaaattcaatcacattggtccttgaattatatgcatatccatcat 53188911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 46198801 - 46198674
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||||||||||||||||||||||| ||||||| ||||||  | |||||||||||||||||||||||||||||||||||||  |||  || ||    
T  46198801 ttttgtttgattgagttgtttaaaatgttattatattgtgtcaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacatttatg 46198702  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||| ||||||||||||||||||||    
T  46198701 tcaaaaaatttcaatcaaattggtcctt 46198674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 44275280 - 44275405
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||   | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  44275280 ttttgtttgattgagttgtttaaaatggtattgtattgtgccaagttcatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 44275379  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
      ||||| ||||||||||||||||||||    
T  44275380 --aaaaaatttcaatcaaattggtcctt 44275405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 2661296 - 2661169
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| ||||||||||||||| |||  | ||||||||||||||||||||||||||||||||||||   |||| |||||    
T  2661296 ttttgtttgattgagttgtttaaaatgatattgtattgtgccatgtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaaccaaacctttctg 2661197  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||  ||| ||||||||||||||||    
T  2661196 tcaaaatattttaatcaaattggtcctt 2661169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 27898177 - 27898327
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||| |||||||||||||| ||||| |||||||||||||  | |||||||||||||||||||||||||||||||||||||  ||||||| ||    
T  27898177 ttttgtttgattaagttgtttaaaatgctattg-attgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacccttttg 27898275  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    |||||||  ||||||||| |||||||||  ||| ||||  ||||||||||||    
T  27898276 tcaaaaaaattcaatcaagttggtccttgaattatatgcatatccatcatat 27898327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 21349776 - 21349652
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||| ||||| ||||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  21349776 ttttgtttgattgagttgtttaaaatgctattctattgcgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 21349677  T
Q  172 tcaaaaattttcaatcaaattggtc 196  Q
    | |||||   |||||||||||||||    
T  21349676 taaaaaaaaatcaatcaaattggtc 21349652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 43766203 - 43766076
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||| ||||||| |||||   | |||  ||||||||||||||||||||||||||||||||  |||| ||||     
T  43766203 ttttgtttgattgagttgtttaaaatgctattttattgtgtcaagttcatgtaacattgtaatgaaaagaggttgtcaatgaatgaatcaaacctttcta 43766104  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||| ||||||||||||||||||||    
T  43766103 tcaaaaaatttcaatcaaattggtcctt 43766076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 2378065 - 2377928
Alignment:
Q  79 tgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaa 178  Q
    |||||||||||||||||||||||||| |||||||||||||  | |||||||||||||||||||||||||     |||||||  ||||||| ||| |||||    
T  2378065 tgattgagttgtttaaaatgttattg-attgtgccaagtccatgtaatgttgtaatgaaaagaggttgt-----aatgaatcaaacccttatgttaaaaa 2377972  T
Q  179 ttttcaatcaaattggtccttctattgtatgtctatccatcata 222  Q
     ||||||||||||||||||||  ||| ||||  |||||||||||    
T  2377971 atttcaatcaaattggtccttgaattatatgcatatccatcata 2377928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 44795281 - 44795158
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||  ||||||||| |||||||||  | |||||||||||||||||||||||||| |||||||||   |||| || ||    
T  44795281 ttttgtttgattgagttgtttaaaataatattgtattatgccaagtccatgtaatgttgtaatgaaaagaggttgtcgatgaatgaaccaaaccattatg 44795182  T
Q  172 tcaaaaattttcaatcaaattggt 195  Q
    ||||||  ||||||||||||||||    
T  44795181 tcaaaatatttcaatcaaattggt 44795158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 21350038 - 21349964
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21350038 tgtgaatgatttgtttaaatagtacagattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 21349964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 46199063 - 46198989
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46199063 tgtgaatgatttgtttaaatagtactgattttgtcttttaattgtataggatgatggtgaaaattgtaaattttt 46198989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 54899523 - 54899366
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtc--tgta------taatgttgtaatgaaaagaggttgtcaatgaatgaatttaa 163  Q
    |||||| ||| |||||||||||||||| |||||||||||||||||||  ||||      |||||||||||||||||||||||||||||||||||||  ||    
T  54899523 ttttgtttgactgagttgtttaaaatgctattgtattgtgccaagtccatgtaatgttgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaa 54899424  T
Q  164 cccttctgtcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcat 221  Q
    || ||| ||||||||  |||||||| || |||||||  ||| ||||  ||||||||||    
T  54899423 cctttccgtcaaaaaaattcaatcacatcggtccttgaattatatgcatatccatcat 54899366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 30599008 - 30599082
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30599008 tgtgaatgatttgtttaaatagtacttattttgtcttttgattgtataagatgatggtgaaaattgtaaattttt 30599082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 53188502 - 53188574
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  53188502 tgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaaattttt 53188574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 2378324 - 2378253
Alignment:
Q  10 tttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgt-aaatttttgtgtg 80  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2378324 tttgtttaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaaatttttgtgtg 2378253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 27897918 - 27897989
Alignment:
Q  4 gaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||| |||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27897918 gaatggtttgtgtaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 27897989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 2225237 - 2225361
Alignment:
Q  83 tgagttgtttaaaatgttattgtattgtgccaagtc--tgta------taatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtca 174  Q
    ||||||||||||||||||||||||||||||||||||  ||||      |||||||||||||||||||||||||||||||||||||  |||  ||||||||    
T  2225237 tgagttgtttaaaatgttattgtattgtgccaagtccatgtaatgttgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacatttctgtca 2225336  T
Q  175 aaaattttcaatcaaattggtcctt 199  Q
    ||||  |||| ||  ||||||||||    
T  2225337 aaaaaattcattcgcattggtcctt 2225361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 24845884 - 24845798
Alignment:
Q  134 tgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttctattgtatgtctatccatca 220  Q
    |||||||||||||| |||||||||||| ||||||||| ||||||  |||| |||||||||||||||||||||| ||||||| |||||    
T  24845884 tgaaaagaggttgtaaatgaatgaattcaacccttctatcaaaatctttccatcaaattggtccttctattgtttgtctatgcatca 24845798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 44275018 - 44275092
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||| ||||||| ||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44275018 tgtgaataatttgtttaaatagtacatattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 44275092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 35904551 - 35904623
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||| |||||| |||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  35904551 tgaatgttttgtttaaattatactgattttgtctttttattgtataggatgattgtgaaaattgtaaattttt 35904623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 43766465 - 43766391
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||||||||||| || || |||  |||||||||||| |||||||||||||||||||||||||||||||||||    
T  43766465 tgtgaatgatttgtttaagtagtacaaattttgtctttttattgtataggatgatggtgaaaattgtaaattttt 43766391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 13466240 - 13466115
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgt 172  Q
    ||||| ||||||  |||||||| ||| || |||||| ||| |||| ||| ||||||||||||||||||||||||  |||||||||||  ||| |||||||    
T  13466240 tttgtttgattggattgtttaacatgctactgtattatgctaagtttgtgtaatgttgtaatgaaaagaggttgaaaatgaatgaatgcaactcttctgt 13466141  T
Q  173 caaaaattttcaatcaaattggtcct 198  Q
    |||||  |||| | ||||||||||||    
T  13466140 caaaatctttccaacaaattggtcct 13466115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 35904849 - 35904936
Alignment:
Q  134 tgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcat 221  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||  |||||||| ||||||||||  ||| ||||  ||||||||||    
T  35904849 tgaaaagaggttgtcaatgaatgaatcaaacctttctgtcaaaaaaattcaatcacattggtccttgaattatatgcatatccatcat 35904936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 13466526 - 13466455
Alignment:
Q  4 gaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||| ||||||||| |  |||||||||||  ||||  |||||||||||||||||||||| | |||||||||    
T  13466526 gaatggtttgttaaacttttactgattttgaattttctttgtataggatgatggtgaaaactataaattttt 13466455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 35904811 - 35904850
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtg 111  Q
    |||||| ||| |||||||||||||||||||||||||||||    
T  35904811 ttttgtttgactgagttgtttaaaatgttattgtattgtg 35904850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 52642631 - 52642849
Alignment:
Q  5 aatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgttattg 104  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52642631 aatggtttgttaaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgttattg 52642730  T
Q  105 tattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttctatt 204  Q
     |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  52642731 cattgtgccaagtctgtgtaatgttgtaatgaaaagaggttgccaatgaatgaatttaacccttctgtcaaaaaatttcaatcaaattggtctttctatt 52642830  T
Q  205 gtatgtctatccatcatat 223  Q
    | |||||||||||||||||    
T  52642831 gcatgtctatccatcatat 52642849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 73 - 223
Target Start/End: Complemental strand, 15105507 - 15105357
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgt 172  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  15105507 tttgtttgattgagttgtttaaaatgttattgtattgtgtcaagtctgtgtaatgttgtaatgaaaagaggttgtcaatgaatgaatccaaccattctgt 15105408  T
Q  173 caaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
     || || ||||||||||||||||||||||||||||||||||||||||||||    
T  15105407 taagaaatttcaatcaaattggtccttctattgtatgtctatccatcatat 15105357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 6817778 - 6817929
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||  |||| |||||    
T  6817778 ttttgtttgattgagttgtttaaaatgctattgtattgtgccaagtacatataatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 6817877  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    |||||||  |||||||||||||||||||  ||| ||||  ||||||||||||    
T  6817878 tcaaaaaaattcaatcaaattggtccttgaattatatgcatatccatcatat 6817929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 3012516 - 3012666
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgt 172  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||  | ||||||||| ||||||| |||||||||||||||||||  |||| ||||||    
T  3012516 tttgtttgattgagttatttaaaatgttattgtattgtgccaagtccatgtaatgttgtgatgaaaataggttgtcaatgaatgaatcaaacctttctgt 3012615  T
Q  173 caaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    |||||| ||||||||||||||||||||  ||| ||||  ||||||||||||    
T  3012616 caaaaaatttcaatcaaattggtccttgaattatatgcatatccatcatat 3012666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 37345398 - 37345248
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||  | ||||||||||||||||||||||||||||||| ||||   ||||||| ||    
T  37345398 ttttgtttgattgagttgtttaaaatgttattgtattgtgtcaagtccatgtaatgttgtaatgaaaagaggttgtcaatgactgaaccaaacccttatg 37345299  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcata 222  Q
    |||||||  |||||||||||||||||||| ||| ||||  |||||||||||    
T  37345298 tcaaaaaaattcaatcaaattggtccttcaattatatgcatatccatcata 37345248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 45045565 - 45045716
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||| ||||||  | ||||||||||||||||||| ||||||||||||||||   ||||||| ||    
T  45045565 ttttgtttgattgagttgtttaaaatgctattgtattgtgtcaagtccatgtaatgttgtaatgaaaagaagttgtcaatgaatgaaccaaacccttatg 45045664  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    |||||||  |||||||||||||||||||| ||| ||||  ||||||||||||    
T  45045665 tcaaaaaaattcaatcaaattggtccttcaattatatgcatatccatcatat 45045716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 50555165 - 50555315
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||| ||||||||||||||||||||| |||||||||||||  | |||||||||||||||||||||||||||||||||||||  || | |||||    
T  50555165 ttttgtttgatggagttgtttaaaatgttattg-attgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaatcattctg 50555263  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||| ||||||||||||||||||||  ||| ||||  ||||||||||||    
T  50555264 tcaaaaaatttcaatcaaattggtccttgaattatatgcatatccatcatat 50555315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 46582650 - 46582777
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||  | || |||||||||||||||||||||||||||||||||   |||| |||||    
T  46582650 ttttgtttgattgagttgtttaaaatgatattgtattgtgccaagtccatgtattgttgtaatgaaaagaggttgtcaatgaatgaaccaaacctttctg 46582749  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||  ||||||||||||||||||||    
T  46582750 tcaaaatatttcaatcaaattggtcctt 46582777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 27088348 - 27088201
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||| |||||||||||||||| |||||||||||| ||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  27088348 ttttgtttgactgagttgtttaaaatgctattgtattgtgtcaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 27088249  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcat 221  Q
    |||||||  |||||||| ||||||||||  ||| ||||  ||||||||||    
T  27088248 tcaaaaa--ttcaatcacattggtccttgaattatatgcatatccatcat 27088201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 51895228 - 51895378
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgt 172  Q
    ||||| |||||||||||||||||||||||||||||| || || |||  | |||||||||||||||||||||||||||||||||||||  |||| || |||    
T  51895228 tttgtttgattgagttgtttaaaatgttattgtattatgtcatgtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttatgt 51895327  T
Q  173 caaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||  |||||||||||||| ||||  ||| ||||  ||||||||||||    
T  51895328 caaaaaaattcaatcaaattggcccttgaattatatgcatatccatcatat 51895378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 25277429 - 25277588
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtc--tgta------taatgttgtaatgaaaagaggttgtcaatgaatgaatttaa 163  Q
    |||||| |||||||||||||||||||| |||||||||||| ||||||  ||||      ||||||||||||||||||||||||||||||| ||||   ||    
T  25277429 ttttgtttgattgagttgtttaaaatgctattgtattgtgtcaagtccatgtaatgttgtaatgttgtaatgaaaagaggttgtcaatgactgaaccaaa 25277528  T
Q  164 cccttctgtcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||| |||||||||  |||||||||||||||||||| ||| ||||  ||||||||||||    
T  25277529 cccttatgtcaaaaaaattcaatcaaattggtccttcaattatatgcatatccatcatat 25277588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 26224607 - 26224764
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtc--tgta------taatgttgtaatgaaaagaggttgtcaatgaatgaatttaa 163  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||  ||||      |||||||||| ||||||||||||||||||||||||||  ||    
T  26224607 ttttgtttgactgagttgtttaaaatgttattgtattgtgccaagtccatgtaatgttgtaatgttgtactgaaaagaggttgtcaatgaatgaatcaaa 26224706  T
Q  164 cccttctgtcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcat 221  Q
    || || |||||||||  |||||||| ||||||||||  ||| ||||  ||||||||||    
T  26224707 cctttatgtcaaaaaaattcaatcacattggtccttgaattatatgcatatccatcat 26224764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 31237576 - 31237695
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| ||||||||||| |||||||  |        ||||||||||||||||||||||||||||||  |||||||||     
T  31237576 ttttgtttgattgagttgtttaaaatgatattgtattgtaccaagtccat--------gtaatgaaaagaggttgtcaatgaatgaatcaaacccttcta 31237667  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||| ||||||||||||||||||||    
T  31237668 tcaaaaaatttcaatcaaattggtcctt 31237695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 37087553 - 37087473
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaat-ttttgtgtg 80  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37087553 tgtgaatgctttgtttaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatattttgtgtg 37087473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 50554906 - 50554977
Alignment:
Q  4 gaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50554906 gaatggtttgtttaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 50554977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 15105770 - 15105696
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15105770 tgtgaatggtttgtttaaatagtactgattttttcttttgattgtataggatgatggtgaaaattgtaaattttt 15105696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 33599945 - 33600022
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtg 80  Q
    |||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  33599945 tgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaaatttttttgtg 33600022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 33600206 - 33600341
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtc--tgta------taatgttgtaatgaaaagaggttgtcaatgaatgaatttaa 163  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||  ||||      ||| |||||||||||||||||||||||||||||||| | ||    
T  33600206 ttttgtttgattgagttgtttaaaatgctattgtattgtgccaagtccatgtaatgttgtaaagttgtaatgaaaagaggttgtcaatgaatgaa-tcaa 33600304  T
Q  164 cccttctgtc-aaaaattttcaatcaaattggtcctt 199  Q
    || ||||||| |||||  ||||||||||| |||||||    
T  33600305 cctttctgtcaaaaaaaattcaatcaaatcggtcctt 33600341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 2870610 - 2870534
Alignment:
Q  123 taatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||||||| ||||||||||||||||||||||||   |||| |||||||||||  ||||||||||||||||||||    
T  2870610 taatgttgtaacgaaaagaggttgtcaatgaatgaaccaaacctttctgtcaaaatatttcaatcaaattggtcctt 2870534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 26224347 - 26224419
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  26224347 tgaatgttttgtttaaattatactgattttgtcttttgattgtataggataattatgaaaattgtaaattttt 26224419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 27088608 - 27088536
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  27088608 tgaatgttttgtttaaattatactgattttgtcttttgattgtataagataattgtgaaaattgtaaattttt 27088536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6817601 - 6817666
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattg 66  Q
    |||||||| |||||| ||||| |||| ||||||||||||||||||||| |||||||||||||||||    
T  6817601 tgtgaatggtttgtttaaatagtactaattttgtcttttgattgtatatgatgatggtgaaaattg 6817666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 174
Target Start/End: Original strand, 42558943 - 42559035
Alignment:
Q  82 ttgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtca 174  Q
    ||||||| ||||| ||| || |||||||| | | || ||| ||||||| ||||||||||||||||   |||||||||| ||||| || |||||    
T  42558943 ttgagttttttaacatgctactgtattgtactaggtgtgtgtaatgttctaatgaaaagaggttgaagatgaatgaatgtaacctttttgtca 42559035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38550245 - 38550483
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgtt 100  Q
    |||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38550245 tgtgaatggtttgttaaaatagtactgattttgtcttttgattttataggatgatggtgaaaattgtaaatttttgtgttattgagttgtttaaaatgtt 38550344  T
Q  101 attgtattgtgccaagtctgtata----------------atgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttca 184  Q
    |||||||||||| |||||||| ||                ||||||||||||||||||||||||||| |||||||||||||||| ||| |||||  ||||    
T  38550345 attgtattgtgcaaagtctgtgtaatgttgtaaagttgttatgttgtaatgaaaagaggttgtcaataaatgaatttaacccttatgtaaaaaaaattca 38550444  T
Q  185 atcaaattggtccttctattgtatgtctatccatcatat 223  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  38550445 atcaaattagtccttctattgtatgtctatccatcatat 38550483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 22154962 - 22154811
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  22154962 ttttgtttgattgaattgtttaaaatgttattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 22154863  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||| ||||||||||||||||||||  ||| ||||  ||||||||||||    
T  22154862 tcaaaaaatttcaatcaaattggtccttgaattatatgcatatccatcatat 22154811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 22210877 - 22210726
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  22210877 ttttgtttgattgaattgtttaaaatgttattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 22210778  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||| ||||||||||||||||||||  ||| ||||  ||||||||||||    
T  22210777 tcaaaaaatttcaatcaaattggtccttgaattatatgcatatccatcatat 22210726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 6604587 - 6604436
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||   | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  6604587 ttttgtttgattgagttgtttaaaatgctattgtattgtgccaagttcatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 6604488  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||| ||||||||||||||||||||  ||| ||||  ||||||||||||    
T  6604487 tcaaaaaatttcaatcaaattggtccttgaattatatgcatatccatcatat 6604436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 39858305 - 39858455
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  39858305 ttttgtttgattgagttgtttaaaatgttattg-attgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaaccattctg 39858403  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||| ||||||||||||||||||||  ||| ||||  ||||||||||||    
T  39858404 tcaaaaaatttcaatcaaattggtccttgaattatatgcatatccatcatat 39858455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 72 - 196
Target Start/End: Original strand, 23905314 - 23905438
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  23905314 ttttgtttgattcagttgtttaaaatgctattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacccttctg 23905413  T
Q  172 tcaaaaattttcaatcaaattggtc 196  Q
    ||||||| ||| |||||||||||||    
T  23905414 tcaaaaaatttaaatcaaattggtc 23905438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 35692413 - 35692563
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||| |||||||||| || |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  35692413 ttttgtttgattgtgttgtttaaa-tgctattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 35692511  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||| ||||||||||||||||||||  ||| ||||  ||||||||||||    
T  35692512 tcaaaaaatttcaatcaaattggtccttgaattatatgcatatccatcatat 35692563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 38473186 - 38473313
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| ||||||||| |||||||||  | |||||||||||||||||||||||||||||||||||||  |||| || ||    
T  38473186 ttttgtttgattgagttgtttaaaatgctattgtattttgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttttg 38473285  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||| ||||||||||||||||||||    
T  38473286 tcaaaaaatttcaatcaaattggtcctt 38473313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 47385270 - 47385428
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataat--------gttgtaatgaaaagaggttgtcaatgaatgaatttaac 164  Q
    ||||| ||||||||||||||| ||| ||||| ||||||||||||||||| ||||        ||||||||||| || ||||||||||||||||||| |||    
T  47385270 tttgtttgattgagttgtttagaattttattttattgtgccaagtctgtgtaatgctgtaatgttgtaatgaacagtggttgtcaatgaatgaattcaac 47385369  T
Q  165 ccttctgtcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    | ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||    
T  47385370 ctttctgtcaaaaaaattcaatcaaattggtccttctattatatgtctatccatcatat 47385428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 27665108 - 27665235
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||   |||| |||||    
T  27665108 ttttgtttgattgagttgtttaaaatgatattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaaccaaacctttctg 27665207  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||  ||| ||||||||||||||||    
T  27665208 tcaaaatattttaatcaaattggtcctt 27665235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 223
Target Start/End: Complemental strand, 45360390 - 45360248
Alignment:
Q  80 gattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaat 179  Q
    ||||||||||||||||||| || || |||||||||||||  | |||||||||||||||||||||||||||||||||||||  ||||||| |||||||||     
T  45360390 gattgagttgtttaaaatgctaatg-attgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacccttatgtcaaaaaa 45360292  T
Q  180 tttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||||||||||||||||  ||| ||||  ||||||||||||    
T  45360291 tttcaatcaaattggtccttgaattatatgcatatccatcatat 45360248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 37114591 - 37114741
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgt 172  Q
    ||||| |||||||||||||||||||| |||||||||||| ||||||  | |||||||||| ||||||||||||||||||||||||||  || | || |||    
T  37114591 tttgtttgattgagttgtttaaaatgctattgtattgtgtcaagtccatgtaatgttgtattgaaaagaggttgtcaatgaatgaatcaaatctttttgt 37114690  T
Q  173 caaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    |||||| ||||||||||||||||||||  ||| ||||  ||||||||||||    
T  37114691 caaaaaatttcaatcaaattggtccttgaattatatgcatatccatcatat 37114741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 37792150 - 37792247
Alignment:
Q  126 tgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||| ||||||||||||||||||||| |||||||||||||||||    
T  37792150 tgttgtaatgaaaagaggttgtcaatgaatgaattcaacccttctgtcaaaatatttccatcaaattggtccttctattgcatgtctatccatcatat 37792247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 34776024 - 34776174
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| ||||| ||||| |||||||  | |||||||||||||||||||||||||||||||||||||  ||| ||||||    
T  34776024 ttttgtttgattgagttgtttaaaatgctattg-attgtcccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaactcttctg 34776122  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    |||||  |||| ||||||||||||||||  ||| ||||  ||||||||||||    
T  34776123 tcaaatttttttaatcaaattggtccttgaattatatgcatatccatcatat 34776174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 29995578 - 29995705
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| ||||||| ||||||||||||   |||  |||||    
T  29995578 ttttgtttgattgagttgtttaaaatgatattgtattgtgccaagtctatgtaatgttgtaatgaacagaggttttcaatgaatgaaccaaacatttctg 29995677  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||  |||||||||||||| |||||    
T  29995678 tcaaaatatttcaatcaaattgatcctt 29995705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 46438572 - 46438699
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| || ||||||||||||||||| |||||||||||||||||||  | |||||||||| ||||||||||||||||| ||||||||  ||||  | ||    
T  46438572 ttttgtttggttgagttgtttaaaatgctattgtattgtgccaagtccatgtaatgttgtactgaaaagaggttgtcaacgaatgaatcaaacctatatg 46438671  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||| ||||||||||||||||||||    
T  46438672 tcaaaaaatttcaatcaaattggtcctt 46438699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 13169111 - 13168994
Alignment:
Q  106 attgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttctattg 205  Q
    |||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||||||||| ||||||||||||||||||||  |||     
T  13169111 attgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctgtcaaaaaatttcaatcaaattggtccttgaatta 13169012  T
Q  206 tatgtctatccatcatat 223  Q
    ||||  ||||||||||||    
T  13169011 tatgcatatccatcatat 13168994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 191
Target Start/End: Original strand, 24227483 - 24227602
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| | |||||||||||||||||| |||||||||||||||||||  | |||||||| ||||||||||||||||||||||||||||  |||| |  ||    
T  24227483 ttttgtttcattgagttgtttaaaatgctattgtattgtgccaagtccatgtaatgttgcaatgaaaagaggttgtcaatgaatgaatcaaaccttgttg 24227582  T
Q  172 tcaaaaattttcaatcaaat 191  Q
    ||||||| ||||||||||||    
T  24227583 tcaaaaaatttcaatcaaat 24227602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 38472925 - 38473004
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtg 80  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38472925 tgtgaatgatttgtttaaacaatactgattttgtcttttgattgtataggatgatggtgaaaattgtaattttttgtgtg 38473004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 48851450 - 48851537
Alignment:
Q  136 aaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||||||||||||||||||||| |||| |||||||||||  |||| ||||||||||||| ||||||||||||||| |||||||||    
T  48851450 aaaagaggttgtcaatgaatgaattcaaccattctgtcaaaatctttccatcaaattggtccctctattgtatgtctacccatcatat 48851537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 48851271 - 48851345
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48851271 tgtgaatggtttgtttaaatagtactgattttgtcttttgattgtataagatgatggtgaaaattgtaaattttt 48851345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 77379 - 77307
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  77379 tgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaaattttt 77307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 34775766 - 34775842
Alignment:
Q  4 gaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtg 80  Q
    ||||| |||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34775766 gaatggtttgtttaaatagtattgattttgtcttttggttgtataggatgatggtgaaaattgtaaatttttgtgtg 34775842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 45360649 - 45360586
Alignment:
Q  12 tgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45360649 tgtttaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 45360586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 24227221 - 24227295
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  24227221 tgtgaatgatttgtttaaatattactgattttgtcttttgattgtataggatgacggtggaaattgtgaattttt 24227295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 46438309 - 46438383
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||| || ||||||||||||||||||||| |||||    
T  46438309 tgtgaatgatttgtttaaatagtactgaatttgtcttttgattgcattggatgatggtgaaaattgtaatttttt 46438383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 22155224 - 22155156
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaa 69  Q
    |||||||| |||||| ||||| |||||| |||||| |||||||||||||||||||||||||||||||||    
T  22155224 tgtgaatggtttgtttaaatagtactgaatttgtcctttgattgtataggatgatggtgaaaattgtaa 22155156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 22211139 - 22211071
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaa 69  Q
    |||||||| |||||| ||||| |||||| |||||| |||||||||||||||||||||||||||||||||    
T  22211139 tgtgaatggtttgtttaaatagtactgaatttgtcctttgattgtataggatgatggtgaaaattgtaa 22211071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 47385007 - 47385087
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaat-ttttgtgtg 80  Q
    |||||||| |||||| ||||  |||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||    
T  47385007 tgtgaatggtttgtttaaatggtactgattttgtcttttgattgtacaggataatggtgaaaattgtaaatcttttgtgtg 47385087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 35692150 - 35692224
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||||| ||| || |||| ||| ||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  35692150 tgtgaatgttttctttaaattatattgattttgtcttttgattgtataagatgattgtgaaaattgtaaattttt 35692224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 23168669 - 23168542
Alignment:
Q  87 ttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaat 186  Q
    |||||||| ||||||||||||| ||| |||||||| ||||  ||||||||||| | ||||  |||||||| ||  ||||| ||||||||||  | | |||    
T  23168669 ttgtttaacatgttattgtattatgctaagtctgtgtaatcgtgtaatgaaaataagttgaaaatgaatggatgcaacccctctgtcaaaatctgtaaat 23168570  T
Q  187 caaattggtccttctattgtatgtctat 214  Q
    |||||||||||||  ||||| |||||||    
T  23168569 caaattggtccttaaattgtttgtctat 23168542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 6604764 - 6604699
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattg 66  Q
    |||||||  |||||| ||||| |||| ||||| |||||||||||||||||||||||||||||||||    
T  6604764 tgtgaatagtttgtttaaatagtacttattttatcttttgattgtataggatgatggtgaaaattg 6604699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 48311009 - 48310945
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaa 137  Q
    ||||| ||||||| |||||||||||| |||| |||| || ||||||||| |||||||||||||||    
T  48311009 tttgtttgattgaattgtttaaaatgctattatattatgtcaagtctgtgtaatgttgtaatgaa 48310945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 48310950 - 48310879
Alignment:
Q  149 aatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtccttctattgtatgtctatccatca 220  Q
    ||||||| |||| |||||| |||||||||   ||| |||||||||||| ||||||||| ||||||| |||||    
T  48310950 aatgaataaattcaaccctcctgtcaaaatcattccatcaaattggtcattctattgtttgtctatgcatca 48310879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 48311273 - 48311199
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||||| |||||| ||||  ||||||||||   ||||  ||||||| |||||||||||||||||| |||||||    
T  48311273 tgtgaatggtttgtttaaattgtactgattttaaattttctttgtataagatgatggtgaaaattgtcaattttt 48311199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 7402951 - 7402878
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttg 146  Q
    ||||| || ||| ||||||||| ||| || |||||||| | | || ||| ||||||||||||||||||||||||    
T  7402951 tttgtttgtttgggttgtttaacatgctactgtattgtactatgtgtgtgtaatgttgtaatgaaaagaggttg 7402878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 107649 - 107798
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgt 172  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||| | |||||||||||    
T  107649 tttgtttgattgagttgtttaaaatgttattgtattgtgccaagtttgtgtaatgtagtaatgaaaaaaggttgtcaatgaatgaa-tcaacccttctgt 107747  T
Q  173 caaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  107748 caaaaaatttcaatcaaattggtcattctattgtatgtctatccatcatat 107798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 107387 - 107461
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  107387 tgtgaatggtttgtttaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 107461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 30464699 - 30464850
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  30464699 ttttgtttgattgagttgtttaaaatgatattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacccttctg 30464798  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||| ||||||||||||||||||||  ||| ||||  ||||||||||||    
T  30464799 tcaaaaaatttcaatcaaattggtccttgaattatatgcatatccatcatat 30464850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 92 - 223
Target Start/End: Original strand, 41494524 - 41494655
Alignment:
Q  92 taaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaat 191  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| | ||||||  |||| |||||||    
T  41494524 taaaatgttattgtattgtgccaagtctgtgtaatgtagtaatgaaaagaggttgtcaatgaatgaattcaacccttttatcaaaatctttccatcaaat 41494623  T
Q  192 tggtccttctattgtatgtctatccatcatat 223  Q
    ||||||||||||||||||||||||||||||||    
T  41494624 tggtccttctattgtatgtctatccatcatat 41494655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 32134897 - 32135047
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgt 172  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||  | |||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  32134897 tttgtttgattgagttgtttaaaatgttattgtattgtgtcaagtcgatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctgt 32134996  T
Q  173 caaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    |||||| ||||||||||||||||||||  ||| ||||  ||||||||||||    
T  32134997 caaaaaatttcaatcaaattggtccttgaattatatgcatatccatcatat 32135047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 12800989 - 12800839
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  12800989 ttttgtttgattgagttgtttaaaatgctattg-attgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaaccattctg 12800891  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||| ||||||||||||||||||||  ||| ||||  ||||||||||||    
T  12800890 tcaaaaaatttcaatcaaattggtccttgaattatatgcatatccatcatat 12800839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 42472545 - 42472672
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||  | ||||||||||||||||| |||||||||||||||||||  |||| |||||    
T  42472545 ttttgtttgattgagttgtttaaaatgctattgtattgtgccaagtccatgtaatgttgtaatgaaaaaaggttgtcaatgaatgaatcaaacctttctg 42472644  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    |||||||| |||||||| ||||||||||    
T  42472645 tcaaaaatattcaatcacattggtcctt 42472672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 21842063 - 21841914
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||| ||||||||||||||||||||||||||||| ||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  21842063 ttttgtttgactgagttgtttaaaatgttattgtattgtggcaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 21841964  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcat 221  Q
    |||||||  |||||||| ||||||||||  ||| ||||  ||||||||||    
T  21841963 tcaaaaaaattcaatcacattggtccttgaattatatgcatatccatcat 21841914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 2180833 - 2180685
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||||||||  |||||||||||||| |||||||||||||  | |||||||||||||||||||||||||||||||||||||  ||||||| ||    
T  2180833 ttttgtttgattgagtt--ttaaaatgttattg-attgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacccttgtg 2180737  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||| ||||||||||||||||||||  ||| ||||  ||||||||||||    
T  2180736 tcaaaaaatttcaatcaaattggtccttgaattatatgcatatccatcatat 2180685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 12738166 - 12738016
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||  | |||||||||||| ||||||||||||| ||||||||||  |||| |||||    
T  12738166 ttttgtttgattgagttgtttaaaatgctattg-attgtgccaagtccatgtaatgttgtaataaaaagaggttgtcgatgaatgaatcaaaccattctg 12738068  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||| ||||||||||||||||||||  ||| ||||  ||||||||||||    
T  12738067 tcaaaaaatttcaatcaaattggtccttgaattatatgcatatccatcatat 12738016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 73 - 223
Target Start/End: Complemental strand, 8540732 - 8540582
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgt 172  Q
    ||||| |||||||||||||||||||| |||||||||||| ||| ||  | ||||||||||||||||| |||||||||||||||||||  |||| ||||||    
T  8540732 tttgtttgattgagttgtttaaaatgctattgtattgtgtcaaatccatgtaatgttgtaatgaaaataggttgtcaatgaatgaatcaaacctttctgt 8540633  T
Q  173 caaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    |||||| |||||||||||||| |||||  ||| ||||  ||||||||||||    
T  8540632 caaaaaatttcaatcaaattgatccttgaattatatgcatatccatcatat 8540582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 34328247 - 34328167
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaat-ttttgtgtg 80  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34328247 tgtgaatgatttgtttaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatattttgtgtg 34328167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 28821456 - 28821369
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaat 159  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||    
T  28821456 ttttgtttgattgagttgtttaaaatgctattgtattgtgccaagtccatctaatgttgtaatgaaaagaggttgtcaatgaatgaat 28821369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 2853330 - 2853457
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||||  | ||||||||||||||||| || |||||||||||||||   |||| || ||    
T  2853330 ttttgtttgattgagttgtttaaaatgatattgtaatgtgccaagtccatgtaatgttgtaatgaaaatagattgtcaatgaatgaaccaaacctttatg 2853429  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||  ||||||| ||||||||||||    
T  2853430 tcaaaatatttcaatgaaattggtcctt 2853457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 17575978 - 17575901
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtg 80  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  17575978 tgaatgatttgtttaaattatactgattttgtcttttgattgtatatgatgattgtgaaaattgtaaatttttgtgtg 17575901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 18624115 - 18624189
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18624115 tgtgaatggtttgtttaaatagtactgattttgtcttttgattgtataggatgatagtgaaaattgtaaattttt 18624189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 28821718 - 28821644
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  28821718 tgtgaatgatttgtttaaatagtactgattttgtctattgattgcataggatgatggtgaaaattgtaaattttt 28821644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 17575258 - 17575186
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  17575258 tgaatgatttgtttaaattatactgattttgtcttttgattgtatatgatgattgtgaaaattgtaaattttt 17575186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 17577289 - 17577217
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  17577289 tgaatgatttgtttaaattatactgattttgtcttttgattgtatatgatgattgtgaaaattgtaaattttt 17577217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 42472285 - 42472363
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaa-atttttgtgtg 80  Q
    |||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  42472285 tgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaactgtaatatttttgtgtg 42472363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 2181092 - 2181021
Alignment:
Q  4 gaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||| ||| || ||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  2181092 gaatggtttatttaaatagtactgattttgtcttttgattgcataagatgatggtgaaaattgtaaattttt 2181021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 21842324 - 21842247
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtg 80  Q
    |||||| |||||| |||| ||||||||||| ||||||||||||||||||| |  ||||||||||||||||||| ||||    
T  21842324 tgaatgttttgtttaaattatactgattttatcttttgattgtataggataactgtgaaaattgtaaatttttttgtg 21842247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 19581890 - 19582039
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatttttgtgtgattgagttgtttaaaatgtt 100  Q
    |||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||| ||||||| ||||||||||||||    
T  19581890 tgtgaatggtttgttaaaatagtactgattttgtcttttaattgtgtaggatgatggtgaaaattataa-tttttgtttgattgaattgtttaaaatgtt 19581988  T
Q  101 attgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaat 151  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||| |||||    
T  19581989 attgtattgtgtcaagtctctgtaatgttgtaatgaaaagaggttttcaat 19582039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 72 - 208
Target Start/End: Complemental strand, 6798587 - 6798451
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||  | ||||||||||||||||||||||||||||||||||| |  |||| |||||    
T  6798587 ttttgtttgattgagttgtttaaaatgctattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgagtcaaacctttctg 6798488  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtat 208  Q
    |||||||  |||||||||||||||||||| |||||||    
T  6798487 tcaaaaaaattcaatcaaattggtccttcaattgtat 6798451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 39456240 - 39456116
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||  ||||||| ||    
T  39456240 ttttgtttgattgagttgtttaaaatgttattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacccttttg 39456141  T
Q  172 tcaaaaattttcaatcaaattggtc 196  Q
    |||||||  ||||||||||||||||    
T  39456140 tcaaaaaaattcaatcaaattggtc 39456116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 19907342 - 19907492
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||  | ||||||||||||||||||||||| |||||||||||||  |||| |||||    
T  19907342 ttttgtttgattgagttgtttaaaatgttattg-attgtgccaagtccatgtaatgttgtaatgaaaagaggttatcaatgaatgaatcaaaccattctg 19907440  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||| ||||||||||||||||||||  ||| ||||  ||||||||||||    
T  19907441 tcaaaaaatttcaatcaaattggtccttgaattatatgcatatccatcatat 19907492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 6784350 - 6784477
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  6784350 ttttgtttgattgagttgtttaaaatgctattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttctg 6784449  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    |||||||  |||||||| ||||||||||    
T  6784450 tcaaaaaaattcaatcacattggtcctt 6784477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 44708884 - 44709010
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||  | |||||||||||||||||||||||||||||||||||||  ||||||| ||    
T  44708884 ttttgtttgattgagttgtttaaaatgttattgtattgcgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacccttatg 44708983  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    | ||||| ||||||||||||||||||||    
T  44708984 t-aaaaaatttcaatcaaattggtcctt 44709010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 34401245 - 34401372
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||   | |||||||||||||||||||||||||||||||||||||  |||| || ||    
T  34401245 ttttgtttgattgagttgtttaaaatgttattgcattgtgccaagttcatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttttg 34401344  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    | ||||| ||||||||||||||||||||    
T  34401345 ttaaaaaatttcaatcaaattggtcctt 34401372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 16764027 - 16763878
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||| |||||||||||||||| |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||  |||| || ||    
T  16764027 ttttgtttgactgagttgtttaaaatgctattgtattgtgccaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacctttatg 16763928  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcat 221  Q
    |||||||  |||||||| ||||||||||  ||| ||||  ||||||||||    
T  16763927 tcaaaaaaattcaatcacattggtccttgaattatatgcatatccatcat 16763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 223
Target Start/End: Complemental strand, 40561305 - 40561155
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgt 172  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||  | ||||||||||||||||||| |||||||||||||||||  |||| || |||    
T  40561305 tttgtttgattgagttgtttaaaatgctattgtattgtgccaagtccatgtaatgttgtaatgaaaagatgttgtcaatgaatgaatcaaacctttttgt 40561206  T
Q  173 caaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
     ||||| ||||||| ||||||||||||  ||| ||||   |||||||||||    
T  40561205 taaaaaatttcaattaaattggtccttaaattatatgcacatccatcatat 40561155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 2767995 - 2767868
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||  |  | |||||||||||||||||||||||||||||||||||||  |||| || ||    
T  2767995 ttttgtttgattaagttgtttaaaatgctattgtattgtgccaaacccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaataaaacctttatg 2767896  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    |||||||  |||||||||||||||||||    
T  2767895 tcaaaaaaattcaatcaaattggtcctt 2767868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 17697288 - 17697161
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| ||||||| |||||||||||| ||||||||| |||||||||  | ||||||||| |||||||||||||||||| ||||||||  |||| |||||    
T  17697288 ttttgtttgattgaattgtttaaaatgctattgtattatgccaagtccatgtaatgttgttatgaaaagaggttgtcaacgaatgaatcaaacctttctg 17697189  T
Q  172 tcaaaaattttcaatcaaattggtcctt 199  Q
    ||||||| ||||||||||| ||||||||    
T  17697188 tcaaaaaatttcaatcaaactggtcctt 17697161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 14388156 - 14388291
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtc--tgta------taatgttgtaatgaaaagaggttgtcaatgaatgaatttaa 163  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||  ||||      |||||||||||||||||||||||||||||||||||||  ||    
T  14388156 ttttgtttgattgagttgtttaaaatgctattgtattgtgccaagtccatgtaatgttgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaa 14388255  T
Q  164 cccttctgtcaaaaattttcaatcaaattggtcctt 199  Q
    || || ||| |||||  |||||||||||||||||||    
T  14388256 cctttatgtaaaaaaacttcaatcaaattggtcctt 14388291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 24206593 - 24206728
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtc--tgta------taatgttgtaatgaaaagaggttgtcaatgaatgaatttaa 163  Q
    |||||| |||||||||||||||||||| ||||||||||| | |||||  ||||      |||||||||||||||||||||||||||||||||||||  ||    
T  24206593 ttttgtttgattgagttgtttaaaatgctattgtattgttctaagtccatgtaatgttgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaa 24206692  T
Q  164 cccttctgtcaaaaattttcaatcaaattggtcctt 199  Q
    || ||||||||||||| |||||||| ||||||||||    
T  24206693 cctttctgtcaaaaatattcaatcacattggtcctt 24206728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 6798849 - 6798770
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaat-ttttgtgt 79  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6798849 tgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatattttgtgt 6798770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 2768257 - 2768183
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  2768257 tgtgaatgatttgtttaaatagtactggttttgtcttttgattatataggatgatggtgaaaattgtaaattttt 2768183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 39663868 - 39663939
Alignment:
Q  4 gaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39663868 gaatggtttgtttaaatagtactgattttgtcttttgattgtataggatgatagtgaaaattgtaaattttt 39663939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 42518231 - 42518302
Alignment:
Q  2 gtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||||||||||| ||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  42518231 gtgaatgatttgtttaaatagtactgatt--gtcttttgattgtataggatgatggtgaaaattgtaaattttt 42518302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 44708622 - 44708696
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||||| |||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44708622 tgtgaatggtttgtttaaatagtacttattttgtcttttgattgtatatgatgatggtgaaaattgtaaattttt 44708696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 6784090 - 6784162
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  6784090 tgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaatttttt 6784162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 34400983 - 34401057
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||| ||||||| ||||| |||  ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34400983 tgtgaataatttgtttaaatagtacatattttgtcttttgattgtataggatgatggtgaaagttgtaaattttt 34401057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 24206333 - 24206405
Alignment:
Q  3 tgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||| ||| || |||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  24206333 tgaatgttttatttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaatttttt 24206405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 20941763 - 20941646
Alignment:
Q  82 ttgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattt 181  Q
    ||||||||||||| |||||| |||||||||| | || ||| ||| ||||||||||||||||||||   ||||||||||  |||| ||||||| |||  ||    
T  20941763 ttgagttgtttaacatgttactgtattgtgctaggtgtgtgtaacgttgtaatgaaaagaggttgaagatgaatgaatgcaacctttctgtcgaaatatt 20941664  T
Q  182 tcaatcaaattggtcctt 199  Q
    || |||||||| ||||||    
T  20941663 tccatcaaattagtcctt 20941646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 17697550 - 17697476
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||  ||  | |||||||||||| ||||||    
T  17697550 tgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataatatatttgtgaaaattgtagattttt 17697476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 14387923 - 14387968
Alignment:
Q  30 tttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||    
T  14387923 tttgtcttttgattgtacaggatgattgtgaaaattgtaaattttt 14387968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 42518490 - 42518525
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtat 107  Q
    |||||| |||||||||||||||||||||||||||||    
T  42518490 ttttgtttgattgagttgtttaaaatgttattgtat 42518525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 26581643 - 26581756
Alignment:
Q  86 gttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaa 185  Q
    ||||||||| ||| || |||||||| |   || |||||| |||||||||||||||||||||   ||||||||||  |||  || |||| |||| |||| |    
T  26581643 gttgtttaacatgctactgtattgtacttggtatgtatattgttgtaatgaaaagaggttgaagatgaatgaatgcaacttttttgtcgaaaaatttcca 26581742  T
Q  186 tcaaattggtcctt 199  Q
    ||||||| ||||||    
T  26581743 tcaaattagtcctt 26581756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 9331 - 9180
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    |||||| |||||||||||||||||||| |||||||||||| ||||||  | |||||||||||||||||||||||||||||||||||||  ||||||| ||    
T  9331 ttttgtttgattgagttgtttaaaatgctattgtattgtgtcaagtccatgtaatgttgtaatgaaaagaggttgtcaatgaatgaatcaaacccttatg 9232  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    |||||||  |||||||||||| ||||||  ||| ||||  ||||||||||||    
T  9231 tcaaaaaaattcaatcaaattagtccttgaattatatgcatatccatcatat 9180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0920 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0920
Description:

Target: scaffold0920; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 1581 - 1728
Alignment:
Q  73 tttgtgtgattgagttgtttaaaatgttattgtattgtgccaagtctgtataatgttgtaatg-aaaagaggttgtcaatgaatgaatttaacccttctg 171  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||| ||||||    |||||||| |||| ||||     
T  1581 tttgtttgattgagttgtttaaaatgttattgtattatgccaagtctatgtaatgttgtaatgaaaaagatgttgtc----aatgaattcaaccattcta 1676  T
Q  172 tcaaaaattttcaatcaaattggtccttctattgtatgtctatccatcatat 223  Q
    ||||||  |||| |||||||||||||||||||||||||||||||||||||||    
T  1677 tcaaaatatttccatcaaattggtccttctattgtatgtctatccatcatat 1728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 564 - 488
Alignment:
Q  123 taatgttgtaatgaaaagaggttgtcaatgaatgaatttaacccttctgtcaaaaattttcaatcaaattggtcctt 199  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||| ||||||||| ||||||||||||||||||||    
T  564 taatgttgtaatgaaaagaggtggtcaatgaatgaatcaaacccttatgtcaaaaagtttcaatcaaattggtcctt 488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 880 - 806
Alignment:
Q  1 tgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttt 75  Q
    |||||||| |||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  880 tgtgaatggtttgtttaaatagtacttattttgtcttttgattgtatatgatgatggtgaaaattgtaaattttt 806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 631 - 586
Alignment:
Q  72 ttttgtgtgattgagttgtttaaaatgttattgtattgtgccaagt 117  Q
    |||||| |||||||||||||||||||| |||| |||||||||||||    
T  631 ttttgtttgattgagttgtttaaaatgctattctattgtgccaagt 586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University