View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4279-Insertion-11 (Length: 152)
Name: NF4279-Insertion-11
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279-Insertion-11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 3e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 46666756 - 46666616
Alignment:
| Q |
12 |
agaatggtatctgtactagccaactcctatgacaaagatgtcaagctattgaatggaacacacaagtctcatgtgcactctacaatggaggtcactgatt |
111 |
Q |
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| T |
46666756 |
agaatggtatctgtactagccaactcctatgacaaagatgtcaagctattgaatggaacacacaagtctcatgtgcactctacaatggaggtcactgatt |
46666657 |
T |
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| Q |
112 |
ttttcactctttcttgctataatcttttttggttttaaatc |
152 |
Q |
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| T |
46666656 |
ttttcactctttcttgctataatcttttttggttttaaatc |
46666616 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 6117820 - 6117909
Alignment:
| Q |
18 |
gtatctgtactagccaactcctatgacaaagatgtcaagctattgaatggaacacacaagtctcatgtgcactctacaatggaggtcact |
107 |
Q |
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| T |
6117820 |
gtatctgtgctagcaaattcctatgacaaacatgccaaacagctcaatggaacccacaaatctcatgtccactccacaatagaggtcact |
6117909 |
T |
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