View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4279-Insertion-16 (Length: 113)
Name: NF4279-Insertion-16
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279-Insertion-16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 77; Significance: 3e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 3642669 - 3642593
Alignment:
| Q |
2 |
aacaattagacatagccttaaaccgtagaaaattgttgaatcttgctacctcactatttgaaagaaaacacatgtta |
78 |
Q |
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| T |
3642669 |
aacaattagacatagccttaaaccgtagaaaattgttgaatcttgctacctcactatttgaaagaaaacacatgtta |
3642593 |
T |
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Target: chr1 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 39543173 - 39543077
Alignment:
| Q |
17 |
ccttaaaccgtagaaaattgttgaatcttgctacctcactatttgaaagaaaacacatgttagcatacataaattcatctatagaatttaagttact |
113 |
Q |
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| T |
39543173 |
ccttaaactgtttaaaattgttgaatcttgctacctcacaatttgaaagaaaacacatattggcatgcataaattcgtccatatagttcaagttact |
39543077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 18075222 - 18075142
Alignment:
| Q |
30 |
aaaattgttgaatcttgctacctcactatttgaaagaaaacacatgttagcatacataaattcatctatagaatttaagtt |
110 |
Q |
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| T |
18075222 |
aaaattgttggatcttgctatctcacgatttgaaagaagtcacatggtagcacacgtaaattcatctatagaattcaagtt |
18075142 |
T |
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