View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4279-Insertion-20 (Length: 318)
Name: NF4279-Insertion-20
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279-Insertion-20 |
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Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 28766275 - 28766209
Alignment:
| Q |
245 |
aaattttatactattgtttgaatattt-aagttttt-ctgaaaagataacagcaagggccattttat |
309 |
Q |
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| T |
28766275 |
aaattttatactattgtttgaatattttaagttttttctgaaaagataatagcaaggaccattttat |
28766209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 30762914 - 30762868
Alignment:
| Q |
72 |
aagtgcactaaattttttatacgtaacacacatgcgtgctcgcacgc |
118 |
Q |
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| T |
30762914 |
aagtgcactaaattttttatacgtaacacaaatgcgtgctcgcacgc |
30762868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 30764229 - 30764183
Alignment:
| Q |
72 |
aagtgcactaaattttttatacgtaacacacatgcgtgctcgcacgc |
118 |
Q |
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| T |
30764229 |
aagtgcactaaattttttatacgtaacacaaatgcgtgctcgcacgc |
30764183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 30765545 - 30765499
Alignment:
| Q |
72 |
aagtgcactaaattttttatacgtaacacacatgcgtgctcgcacgc |
118 |
Q |
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| T |
30765545 |
aagtgcactaaattttttatacgtaacacaaatgcgtgctcgcacgc |
30765499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 30769126 - 30769080
Alignment:
| Q |
72 |
aagtgcactaaattttttatacgtaacacacatgcgtgctcgcacgc |
118 |
Q |
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|
| T |
30769126 |
aagtgcactaaattttttatacgtaacacaaatgcgtgctcgcacgc |
30769080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 30770447 - 30770401
Alignment:
| Q |
72 |
aagtgcactaaattttttatacgtaacacacatgcgtgctcgcacgc |
118 |
Q |
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| T |
30770447 |
aagtgcactaaaatttttatacgtaacacacatgcgtgctcgtacgc |
30770401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 30680081 - 30679996
Alignment:
| Q |
21 |
attagcaaggtggtcactgtaattttgagtgacctgtgcaaaacgtgaagtaagtgcactaaattttttatacgtaacacacatgc |
106 |
Q |
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| T |
30680081 |
attagcaaggtcgtccttgaaattttgagtgacccatgtaaaatgtgaagtaagtgtcctaaattttttatacgcgacacacatgc |
30679996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 30761595 - 30761548
Alignment:
| Q |
72 |
aagtgcactaaatttttt-atacgtaacacacatgcgtgctcgcacgc |
118 |
Q |
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| T |
30761595 |
aagtgcactaaatttttttatatgtaacacacatgcgtgctcgcacgc |
30761548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 30771715 - 30771669
Alignment:
| Q |
72 |
aagtgcactaaattttttatacgtaacacacatgcgtgctcgcacgc |
118 |
Q |
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| T |
30771715 |
aagtgcactaaaaattttatacgtaacacacatgcgtgctcgtacgc |
30771669 |
T |
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