View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4279-Insertion-22 (Length: 127)
Name: NF4279-Insertion-22
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279-Insertion-22 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 2e-62; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 26996599 - 26996723
Alignment:
| Q |
3 |
accggtgtttatgctaaaggagcttatcctggttatgccggggaccttttggtggacaaaacaagtggtgctagctacaacgctaatggtgataatggaa |
102 |
Q |
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| T |
26996599 |
accggtgtttatgctaaaggagcttatcctggttatgctggggaccttttggtggacaaaacaagtggtgctagctacaacgctaatggtgataatggaa |
26996698 |
T |
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| Q |
103 |
ggaagtatttgttgcctgctattgt |
127 |
Q |
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| T |
26996699 |
ggaagtatttgttgcctgctattgt |
26996723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 27002874 - 27002998
Alignment:
| Q |
3 |
accggtgtttatgctaaaggagcttatcctggttatgccggggaccttttggtggacaaaacaagtggtgctagctacaacgctaatggtgataatggaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27002874 |
accggtgtttatgctaaaggagcttatcctggttatgctggggaccttttggtggataaaacaagtggtgctagctacaatgctaatggtgataatggaa |
27002973 |
T |
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| Q |
103 |
ggaagtatttgttgcctgctattgt |
127 |
Q |
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| T |
27002974 |
ggaagtatttgttgcctgctattgt |
27002998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 7e-53
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 26722155 - 26722279
Alignment:
| Q |
3 |
accggtgtttatgctaaaggagcttatcctggttatgccggggaccttttggtggacaaaacaagtggtgctagctacaacgctaatggtgataatggaa |
102 |
Q |
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| T |
26722155 |
accggtgtttatgctaaaggagcttatcctggttatgctggggaccttttgctggacaaaacaagtggtgctagctataatgcaaatggtgataatggaa |
26722254 |
T |
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| Q |
103 |
ggaagtatttgttgcctgctattgt |
127 |
Q |
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| T |
26722255 |
ggaagtatttgttgcctgctattgt |
26722279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 105; E-Value: 7e-53
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 26991904 - 26992028
Alignment:
| Q |
3 |
accggtgtttatgctaaaggagcttatcctggttatgccggggaccttttggtggacaaaacaagtggtgctagctacaacgctaatggtgataatggaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || || |||||||||||||||| |
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| T |
26991904 |
accggtgtttatgctaaaggagcttatcctggttatgctggggaccttttgctggacaaaacaagtggtgctagctataatgcaaatggtgataatggaa |
26992003 |
T |
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| Q |
103 |
ggaagtatttgttgcctgctattgt |
127 |
Q |
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| T |
26992004 |
ggaagtatttgttgcctgctattgt |
26992028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 33828859 - 33828965
Alignment:
| Q |
12 |
tatgctaaaggagcttatcctggttatgccggggaccttttggtggacaaaacaagtggtgctagctacaacgctaatggtgataatggaaggaagtatt |
111 |
Q |
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|||| |||||||||||| ||||| || || ||| ||||||||||||| |||||||||||| || || ||||||||||| ||||||||||| |||| |
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| T |
33828859 |
tatggtaaaggagcttaccctggctacgctgggaaccttttggtggatccaacaagtggtgcaagttataacgctaatggcatcaatggaaggaaatatt |
33828958 |
T |
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| Q |
112 |
tgttgcc |
118 |
Q |
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||||||| |
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| T |
33828959 |
tgttgcc |
33828965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 33821636 - 33821737
Alignment:
| Q |
17 |
taaaggagcttatcctggttatgccggggaccttttggtggacaaaacaagtggtgctagctacaacgctaatggtgataatggaaggaagtatttgttg |
116 |
Q |
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|||||| ||||| ||||| || || ||| |||| |||||||| |||||||||||| || || ||||||||||||| ||||||||||| ||||||||| |
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| T |
33821636 |
taaaggggcttaccctggctacgctgggaacctcttggtggatccaacaagtggtgcgagttataacgctaatggtgtcaatggaaggaaatatttgttg |
33821735 |
T |
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| Q |
117 |
cc |
118 |
Q |
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|| |
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| T |
33821736 |
cc |
33821737 |
T |
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