View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4279-Insertion-5 (Length: 199)
Name: NF4279-Insertion-5
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 46604952 - 46604754
Alignment:
| Q |
1 |
tttgctaccaattccccttatgaacatcctttaccatataagcagctttcttagtcttcccttctttaaaatatcaggtttcactttattcctctctatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46604952 |
tttgctaccaattccccttatgaacatcctttaccatataagcagctttcttagtcttcccttctttaaaatatcaggtttcactttattcctctctatc |
46604853 |
T |
|
| Q |
101 |
tcctcaaaaagcccaatccccattttactattaccatctgttgttagagatgaagaaaatgagnttggagataaagaagaaaaaacagagagatgaaga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
46604852 |
tcctcaaaaagcccaatccccattttactattaccatctgttgttagagatgaagaaaatgaggttggagatgaagaagaaaaaacagagagatgaaga |
46604754 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 45448035 - 45448233
Alignment:
| Q |
1 |
tttgctaccaattccccttatgaacatcctttaccatataagcagctttcttagtcttcccttctttaaaatatcaggtttcactttattcctctctatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45448035 |
tttgctaccaattccccttatgaacatcctttaccatataagcaactttcttagtcttcccttctttaaaatatcaggtttcactttattcctctctatc |
45448134 |
T |
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| Q |
101 |
tcctcaaaaagcccaatccccattttactattaccatctgttgttagagatgaagaaaatgagnttggagataaagaagaaaaaacagagagatgaaga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
45448135 |
tcctcaaaaagcccaatccccattttactattaccatctgttgttagagatgaagaaaatgaggttggagatgaagaagaaaaaacagagagatgaaga |
45448233 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 33608887 - 33609085
Alignment:
| Q |
1 |
tttgctaccaattccccttatgaacatcctttaccatataagcagctttcttagtcttcccttctttaaaatatcaggtttcactttattcctctctatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33608887 |
tttgctaccaattccccttatgaacatcctttaccatataagcagctttcttagtcttcccttctttaaaatataaggtttcactttattcctctctatc |
33608986 |
T |
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| Q |
101 |
tcctcaaaaagcccaatccccattttactattaccatctgttgttagagatgaagaaaatgagnttggagataaagaagaaaaaacagagagatgaaga |
199 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| |
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| T |
33608987 |
tcctcaaaaagctcaatccccattttactattaccaactgttgttagagatgaagaaaatgagattggagatgaagaagaaaaaacagagatatgaaga |
33609085 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 4241359 - 4241410
Alignment:
| Q |
148 |
agatgaagaaaatgagnttggagataaagaagaaaaaacagagagatgaaga |
199 |
Q |
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||||||||||| || | |||||||||||||||||||||||||| |||||||| |
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| T |
4241359 |
agatgaagaaattggggttggagataaagaagaaaaaacagagggatgaaga |
4241410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 4284084 - 4284135
Alignment:
| Q |
148 |
agatgaagaaaatgagnttggagataaagaagaaaaaacagagagatgaaga |
199 |
Q |
| |
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||||||||||| || | ||| |||||||||||||||||||||| |||||||| |
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| T |
4284084 |
agatgaagaaattggggttgaagataaagaagaaaaaacagagggatgaaga |
4284135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 35535227 - 35535159
Alignment:
| Q |
68 |
aaaatatcaggtttcactttattcctctctatctcctcaaaaagcccaatccccattttactattacca |
136 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
35535227 |
aaaatatcagctttcactttattcctctccatctcctcaaaaagcccaatccccatttcactattacca |
35535159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 35535316 - 35535258
Alignment:
| Q |
10 |
aattccccttatgaacatcctttaccatataagcagctttcttagtcttcccttcttta |
68 |
Q |
| |
|
|||| ||||||| || ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35535316 |
aattacccttatcaagctccttaaccatataagcagctttcttagtcttcccttcttta |
35535258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 11670224 - 11670173
Alignment:
| Q |
139 |
tgttgttagagatgaagaaaatgagnttggagataaagaagaaaaaacagag |
190 |
Q |
| |
|
|||| ||||||||||||||| || |||||||| ||||||||||||||||| |
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| T |
11670224 |
tgttattagagatgaagaaattggagttggagatgaagaagaaaaaacagag |
11670173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 33738115 - 33738069
Alignment:
| Q |
141 |
ttgttagagatgaagaaaatgagnttggagataaagaagaaaaaaca |
187 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||| |||||||| |
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| T |
33738115 |
ttgttagagatgaagaaattgaggttggagataaagaaaaaaaaaca |
33738069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 33551950 - 33551899
Alignment:
| Q |
148 |
agatgaagaaaatgagnttggagataaagaagaaaaaacagagagatgaaga |
199 |
Q |
| |
|
||||||||||| || | |||||||| |||||||||||| |||| |||||||| |
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| T |
33551950 |
agatgaagaaattggggttggagatgaagaagaaaaaatagagggatgaaga |
33551899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 44458989 - 44458938
Alignment:
| Q |
139 |
tgttgttagagatgaagaaaatgagnttggagataaagaagaaaaaacagag |
190 |
Q |
| |
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|||||||||||||||||||| || ||| |||| ||||||||||||||||| |
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| T |
44458989 |
tgttgttagagatgaagaaattggagttgaagatgaagaagaaaaaacagag |
44458938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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