View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4279-Insertion-6 (Length: 77)

Name: NF4279-Insertion-6
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4279-Insertion-6
NF4279-Insertion-6
[»] chr4 (4 HSPs)
chr4 (2-77)||(23676773-23676848)
chr4 (32-77)||(23676926-23676971)
chr4 (1-73)||(10206099-10206171)
chr4 (2-70)||(27123277-27123345)
[»] chr7 (2 HSPs)
chr7 (2-73)||(3019860-3019931)
chr7 (2-69)||(44151402-44151469)
[»] chr5 (4 HSPs)
chr5 (2-70)||(38047804-38047872)
chr5 (2-63)||(37611147-37611208)
chr5 (2-63)||(37787877-37787938)
chr5 (32-70)||(35551058-35551096)
[»] chr3 (2 HSPs)
chr3 (2-70)||(24281124-24281192)
chr3 (2-70)||(34383019-34383087)
[»] chr2 (5 HSPs)
chr2 (2-70)||(9478376-9478444)
chr2 (2-70)||(30552568-30552636)
chr2 (32-70)||(2790345-2790383)
chr2 (32-70)||(39622058-39622096)
chr2 (2-65)||(5759505-5759568)
[»] chr1 (4 HSPs)
chr1 (2-69)||(23373239-23373306)
chr1 (2-60)||(43953981-43954039)
chr1 (19-70)||(6292586-6292637)
chr1 (3-70)||(11893518-11893585)
[»] chr8 (3 HSPs)
chr8 (32-70)||(10727451-10727489)
chr8 (32-70)||(12361301-12361339)
chr8 (10-70)||(14926907-14926967)
[»] chr6 (1 HSPs)
chr6 (2-70)||(2460076-2460144)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 8e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-36
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 23676773 - 23676848
Alignment:
Q  2 gtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataagtcaatcaaagtag 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23676773 gtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataagtcaatcaaagtag 23676848  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 23676971 - 23676926
Alignment:
Q  32 aagtacttatacaagtagataagttcaaataagtcaatcaaagtag 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23676971 aagtacttatacaagtagataagttcaaataagtcaatcaaagtag 23676926  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 10206171 - 10206099
Alignment:
Q  1 agtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataagtcaatcaaa 73  Q
    |||||||||||||| ||||||||| || |||||||| |||| |   |||||||| ||| |||| |||||||||    
T  10206171 agtttccataagctctctcaaacactctcaaaagtatttatgcctatagataagctcacataattcaatcaaa 10206099  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 27123345 - 27123277
Alignment:
Q  2 gtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataagtcaatc 70  Q
    ||||||||||||| ||||||||| || || |||||||||| | |||  ||||| |||||||||| ||||    
T  27123345 gtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagttaatc 27123277  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 3019860 - 3019931
Alignment:
Q  2 gtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataagtcaatcaaa 73  Q
    ||||||||||||  ||| |||||| | || |||||||||||| |||||||||| ||||||||||||||||||    
T  3019860 gtttccataagcactcttaaacaagctcacaagtacttatactagtagataagctcaaataagtcaatcaaa 3019931  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 44151469 - 44151402
Alignment:
Q  2 gtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataagtcaat 69  Q
    |||| |||||||| ||||||| |||| || ||||||||||   |||| ||||||||||||||||||||    
T  44151469 gttttcataagctctctcaaataatctcacaagtacttatgtcagtatataagttcaaataagtcaat 44151402  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 38047872 - 38047804
Alignment:
Q  2 gtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataagtcaatc 70  Q
    ||||||||||||| || |||||| ||||| |||||||||||  ||||||||||||||| |||| |||||    
T  38047872 gtttccataagctctcccaaacagtcacacaagtacttataatagtagataagttcaagtaagccaatc 38047804  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 37611208 - 37611147
Alignment:
Q  2 gtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataa 63  Q
    |||| |||||||| |||||||||||| || |||||||| | | |||||||||||||||||||    
T  37611208 gttttcataagctctctcaaacaatctcacaagtacttgtgccagtagataagttcaaataa 37611147  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 37787938 - 37787877
Alignment:
Q  2 gtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataa 63  Q
    |||| |||||||| |||||||||||| || |||||||| | | |||||||||||||||||||    
T  37787938 gttttcataagctctctcaaacaatctcacaagtacttgtgccagtagataagttcaaataa 37787877  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 35551058 - 35551096
Alignment:
Q  32 aagtacttatacaagtagataagttcaaataagtcaatc 70  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  35551058 aagtgcttatgcaagtagataagttcaaataagtcaatc 35551096  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 24281124 - 24281192
Alignment:
Q  2 gtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataagtcaatc 70  Q
    |||| |||||||| ||||||||||||||| |||| ||||||| ||||||||   |||||||||||||||    
T  24281124 gttttcataagctctctcaaacaatcacacaagtgcttataccagtagatagactcaaataagtcaatc 24281192  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 34383019 - 34383087
Alignment:
Q  2 gtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataagtcaatc 70  Q
    |||||||||||||||||||||||  |  ||||||  ||||| |||||||||| || |||||||| ||||    
T  34383019 gtttccataagctatctcaaacagacttaaaagtgtttatataagtagataaatttaaataagttaatc 34383087  T

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Target: chr2 (Bit Score: 33; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 9478376 - 9478444
Alignment:
Q  2 gtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataagtcaatc 70  Q
    |||| ||||| || ||||||||| ||||| ||||||||||    |||||||||||||||||||||||||    
T  9478376 gtttgcataaactctctcaaacagtcacacaagtacttatgttggtagataagttcaaataagtcaatc 9478444  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 30552636 - 30552568
Alignment:
Q  2 gtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataagtcaatc 70  Q
    ||||| |||| |||||||||||| |  ||||||| ||||||| |||||||||| ||||||| |||||||    
T  30552636 gtttcgataacctatctcaaacagtttcaaaagtgcttataccagtagataagctcaaatatgtcaatc 30552568  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 2790345 - 2790383
Alignment:
Q  32 aagtacttatacaagtagataagttcaaataagtcaatc 70  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  2790345 aagtacttatactagtagataagttcaaataagccaatc 2790383  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 39622058 - 39622096
Alignment:
Q  32 aagtacttatacaagtagataagttcaaataagtcaatc 70  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  39622058 aagtgcttatacaagtagataagttcaaataagtaaatc 39622096  T

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Target: chr2; HSP #5
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 5759568 - 5759505
Alignment:
Q  2 gtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataagt 65  Q
    ||||||||||||| || |||||| || || |||||||||||| | |||||||  ||||||||||    
T  5759568 gtttccataagctctcccaaacagtctcacaagtacttataccaatagataaactcaaataagt 5759505  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 23373306 - 23373239
Alignment:
Q  2 gtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataagtcaat 69  Q
    ||||| ||||||| || ||||||||| || |||| ||||||  |||||| ||||||||||||||||||    
T  23373306 gtttctataagctctcccaaacaatctcacaagtgcttatatcagtagacaagttcaaataagtcaat 23373239  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 43954039 - 43953981
Alignment:
Q  2 gtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaa 60  Q
    ||||||||||||||||||||||| |  || |||||||||||| | |||||||| |||||    
T  43954039 gtttccataagctatctcaaacagtttcacaagtacttataccaatagataagctcaaa 43953981  T

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Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 6292586 - 6292637
Alignment:
Q  19 caaacaatcacaaaagtacttatacaagtagataagttcaaataagtcaatc 70  Q
    ||||||||| ||||||| |||||   |||||||||| |||||||||||||||    
T  6292586 caaacaatctcaaaagtgcttatgtcagtagataagctcaaataagtcaatc 6292637  T

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Target: chr1; HSP #4
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 11893585 - 11893518
Alignment:
Q  3 tttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataagtcaatc 70  Q
    ||||||||| || ||  |||||||| || ||||| || | | ||||||||||||||||||||||||||    
T  11893585 tttccataaactttcgtaaacaatctcacaagtatttgtgctagtagataagttcaaataagtcaatc 11893518  T

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Target: chr8 (Bit Score: 31; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 10727451 - 10727489
Alignment:
Q  32 aagtacttatacaagtagataagttcaaataagtcaatc 70  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  10727451 aagtacttatacaagtagataaactcaaataagtcaatc 10727489  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 12361301 - 12361339
Alignment:
Q  32 aagtacttatacaagtagataagttcaaataagtcaatc 70  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  12361301 aagtacttatatcagtagataagttcaaataagtcaatc 12361339  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 14926967 - 14926907
Alignment:
Q  10 aagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataagtcaatc 70  Q
    ||||| ||||||||| || || |||| ||||| | |||| |||||||||||||||||||||    
T  14926967 aagctctctcaaacagtctcacaagtgcttatgccagtaaataagttcaaataagtcaatc 14926907  T

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Target: chr6 (Bit Score: 29; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 2460144 - 2460076
Alignment:
Q  2 gtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttcaaataagtcaatc 70  Q
    ||||||||||||| ||||||||| || || |||||||||| | |||  ||||| |||||||||| ||||    
T  2460144 gtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagttaatc 2460076  T

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