View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4279-Insertion-8 (Length: 233)
Name: NF4279-Insertion-8
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279-Insertion-8 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0011 (1 HSPs) |
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| [»] scaffold0662 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 49575439 - 49575209
Alignment:
| Q |
1 |
catacccaaacaaattaatgggtgtaacagtatccttaatcacactccatgaaaaagcaatcaaaaagccaatcttttaacaacaccagcaacattcatt |
100 |
Q |
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| T |
49575439 |
catacccaaacaaattaatgggtgtaacagtatccttaatcacactccatgaaaaagcaatcaaaa-gccaatcttt-aacaacaccagcaacattcatt |
49575342 |
T |
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| Q |
101 |
gtcaaagcagatgttttcccaacaagaagaaaantagcaagattcaaagcaaatgcacacaaagaattagtaccaaaaatgacaaaatcaaaatgaaaac |
200 |
Q |
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| T |
49575341 |
gtcaaagcagatgttttcccaacaagaagaaaaacagcaagattcaaagcaaatgcacacaaagaattagtcccaaaaatgacaaaatcaaaatgaaaac |
49575242 |
T |
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| Q |
201 |
ttgaattctctttcaaaattggatattccacaa |
233 |
Q |
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| T |
49575241 |
ttgaattctctttcaaaattggatattccacaa |
49575209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 47013848 - 47014046
Alignment:
| Q |
1 |
catacccaaacaaattaatgggtgtaacagtatccttaatcacactccatgaaaaagcaatcaaaaagccaatcttttaacaacaccagcaacattcatt |
100 |
Q |
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| T |
47013848 |
cataaccaatcaaattaatcggtgtcacagtatccttaatcaccgaccacgagaatgcaatcaacaa-ccaatc-cttaacaaccccagcaacattcata |
47013945 |
T |
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| Q |
101 |
gtcaaagcagatgttttcccaacaagaagaaaantagcaagattcaaagcaaatgcacacaaagaattagtaccaaaaatgacaaaatcaaaatgaaaac |
200 |
Q |
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| T |
47013946 |
gtcaaagccgacgtcttcccaaccaacaaaaacacagcaagattcaaagcaaaagcacacagcgaatttgtcccaaaaatcgcgaaatccaaatggaaac |
47014045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 242714 - 242568
Alignment:
| Q |
21 |
ggtgtaacagtatccttaatcacactccatgaaaaagcaatcaaaaagccaatcttttaacaacaccagcaacattcattgtcaaagcagatgttttccc |
120 |
Q |
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||||||||||||||||||||||| ||| ||||| ||||| | || |||||| || | ||||||||||||||||||| |||||||| || || ||||| |
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| T |
242714 |
ggtgtaacagtatccttaatcactgaccaagaaaatgcaataagcaa-ccaatccttca-caacaccagcaacattcatcgtcaaagccgaagtcttccc |
242617 |
T |
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| Q |
121 |
aacaagaagaaaantagcaagattcaaagcaaatgcacacaaagaatta |
169 |
Q |
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| T |
242616 |
aacaagcaaaaacacagcaaggttcaaagcaaaagcacacaacgaatta |
242568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 1 - 185
Alignment:
| Q |
15 |
ttaatgggtgtaacagtatccttaatcacactccatgaaaaagcaatcaaaaagccaatcttttaacaacaccagcaacattcattgtcaaagcagatgt |
114 |
Q |
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||||| ||||| ||||||||||||||||| ||| || || |||||||| || |||||| || |||||| |||||||||||||| |||||||| || || |
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| T |
1 |
ttaatcggtgtcacagtatccttaatcaccgaccacgagaatgcaatcaacaa-ccaatcctt-aacaaccccagcaacattcatagtcaaagccgacgt |
98 |
T |
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| Q |
115 |
tttcccaacaagaagaaaantagcaagattcaaagcaaatgcacacaaagaattagtaccaaaaatgacaaaatcaaaatgaaaact |
201 |
Q |
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| T |
99 |
cttcccaaccaacaaaaacacagcaagattcaaagcaaaagcacacagcgaatttgtcccaaaaatcgcgaaatccaaatggaaact |
185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 32713307 - 32713357
Alignment:
| Q |
76 |
tttaacaacaccagcaacattcattgtcaaagcagatgttttcccaacaag |
126 |
Q |
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| T |
32713307 |
tttaacaacaccagcaacattcattgtcaaaacatatgttttcccaacaag |
32713357 |
T |
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