View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4279_high_2 (Length: 840)
Name: NF4279_high_2
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 692; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 14 - 823
Target Start/End: Complemental strand, 7524012 - 7523204
Alignment:
| Q |
14 |
catcaccactatccttatat-accactgtcatccctctccttagatctgcattcacagcaccatccaccaaccttcttcacagatccaactcccatccat |
112 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7524012 |
catcaccactatccttatatcaccactgtcatccctctccttagatctgcattcacagcaccatccaccaaccttcttcacagatacaactcccatccat |
7523913 |
T |
|
| Q |
113 |
cgtcaccactgtcatcaccgtcctcaccaccaccatttatccctacaatcattgccttctgagctcccaccctcacaaccaccaccatcaccactgcgca |
212 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| |
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| T |
7523912 |
cgtcaccactgtcatcaccgtcctcaccaccaccatttatccctacaatcattgccttctgagctcccaccctcacaactaccaccgtcaccaccgcgca |
7523813 |
T |
|
| Q |
213 |
tcaccaccttctgccgtcttctttctttcgttccatatctcgtattcatctatcattctttaagattatttgtgtttatatgattttcattcgttcttag |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
7523812 |
tcaccaccttctgccgtcttctttctttcgttccatatctcgtattcatctatcattatttaagattatttgtgtttatatgattttcattcgttctcag |
7523713 |
T |
|
| Q |
313 |
atatagtggtggtcgttgttgataacgatgttggttgtgatgactgatgaggatggtgggagataatggtggtagggaggaggatggtggaagaatggag |
412 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7523712 |
atacagtggtggtcgttgttgataacgatgttggttgtgatgactgataagaatggtggaagataatggtggtagggaggaggatggtggaagaatggag |
7523613 |
T |
|
| Q |
413 |
taagaaaagcacatgcagagacaagaggaagaatgggatgtggtggatttacaaaaccgcctctattttaaggtttaaatacccaaattattcatggtaa |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
7523612 |
taagaaaagcacatgcagagacaagaggaagaatgggatgtggtggatttacaaaaccgcctctgttttaaggtttaaatacccaaattattcatggtaa |
7523513 |
T |
|
| Q |
513 |
aatttactctaaatattagatatgccagcaacacacaatttccttttatgtcaatttgtatcaattgtcatatcttagatgtatacgtgatttttcttct |
612 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
7523512 |
aatttactctaaatattagatatgctagcaacacacaatttccttttatgtcaatttgtatcaattgtcatatcttaaatgcatacgtgatttttcttct |
7523413 |
T |
|
| Q |
613 |
attgttacatttcatcatggatattccttggttgtttaatttccttcaagataacccatatgctctcattccttggagacagatatacgatgtttaagta |
712 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7523412 |
attgttacatttcatcatggatattctttggttgtttaatttccttcaagataacccatatgctctcattccttggagacagatatatgatgtttaagta |
7523313 |
T |
|
| Q |
713 |
tatctctcatatatcagatttgtgaaaacaaaaactcatatatctcatatttagnnnnnnnnnnnncacatgttttacatggttaaaatccaactaatca |
812 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7523312 |
tatctctcatatatcagatttgtgaaaacaaaaactc--atatctcatatttagttttttatttttcacatgttttacatggttaaaatccaactaatca |
7523215 |
T |
|
| Q |
813 |
atgtattttat |
823 |
Q |
| |
|
||||||||||| |
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|
| T |
7523214 |
atgtattttat |
7523204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 524 - 821
Target Start/End: Original strand, 7522346 - 7522651
Alignment:
| Q |
524 |
aatattagatatgccagcaacacacaatttccttttatgtcaatttgtatcaattgtcatatcttagatgtatacgtgatttttcttctattgttacatt |
623 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | |||||| ||||||||||||||||||||| ||| ||| |||||| ||||||| ||||||||| |
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|
| T |
7522346 |
aatattagatatgctagcaacacacaatttccttt-aggtcaatgtgtatcaattgtcatatcttaaatgcatatgtgattcttcttctcatgttacatt |
7522444 |
T |
|
| Q |
624 |
tcatc--atggatattccttggttgtttaatttccttcaagataacccatatgctctcat------tccttggagacagatatacgatgtttaagtata- |
714 |
Q |
| |
|
||||| ||||||||||||| |||| | ||||||||||||||||| ||| |||||| ||| ||| |||| ||| |||||||||||| | ||||| |
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| T |
7522445 |
tcatcatatggatattcctttgttgctcaatttccttcaagataatccagatgctcccatttcttctccatggaaacaaatatacgatgttgaggtatat |
7522544 |
T |
|
| Q |
715 |
-tctctcatatatcagatttgtgaaaacaaaaactcatatatctcatatttagnnnnnnnnnnnncacatgttttacatggttaaaatccaactaatcaa |
813 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||||||||| ||| || |
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| T |
7522545 |
ctctctcatatattagatttgtgaaaacaaaaactcacatatctcatattttgttttttatttttcacatg-tttacatggttaaaatccaacaaatgaa |
7522643 |
T |
|
| Q |
814 |
tgtatttt |
821 |
Q |
| |
|
|||||||| |
|
|
| T |
7522644 |
tgtatttt |
7522651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 7559393 - 7559340
Alignment:
| Q |
367 |
ggtgggagataatggtggtagggaggaggatggtggaagaatggagtaagaaaa |
420 |
Q |
| |
|
||||||||| |||| | ||||||| |||||||||||||||||||| ||||||| |
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|
| T |
7559393 |
ggtgggagaaaatgttaatagggagaaggatggtggaagaatggagaaagaaaa |
7559340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 7559731 - 7559642
Alignment:
| Q |
71 |
caccatccaccaaccttcttcacagatccaactcccatccatcgtcaccactgtcatcaccgtcctcaccaccaccatttatccctacaa |
160 |
Q |
| |
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||||| ||||||| ||| |||||| ||||| ||| || ||| || |||||||||||| | | ||||||||||||| |||| || |||||| |
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|
| T |
7559731 |
caccacccaccaaacttattcacatatccatctctcacccaccgccaccactgtcatgatcatcctcaccaccactatttctctctacaa |
7559642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 9e-23; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 356 - 499
Target Start/End: Complemental strand, 961556 - 961413
Alignment:
| Q |
356 |
ctgatgaggatggtgggagataatggtggtagggaggaggatggtggaagaatggagtaagaaaagcacatgcagagacaagaggaagaatgggatgtgg |
455 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||||||| |||||| |||||||||||| || ||| |||| ||||||||| |||| |
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| T |
961556 |
ctgatgaggacggtgggagataatggcactagggatgaggatggtggaaggatggagaaagaaaagcacacacaaagaagagagtaagaatggggtgtga |
961457 |
T |
|
| Q |
456 |
tggatttacaaaaccgcctctattttaaggtttaaatacccaaa |
499 |
Q |
| |
|
|| |||||||| || ||| || ||||||||| ||||||||||| |
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|
| T |
961456 |
tgtatttacaatactgcccctgctttaaggttgaaatacccaaa |
961413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 370 - 508
Target Start/End: Complemental strand, 944070 - 943933
Alignment:
| Q |
370 |
gggagataatggtggtagggaggaggatggtggaagaatggagtaagaaaagcacatgcagagacaagaggaagaatgggatgtggtggatttacaaaac |
469 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| ||| ||| |||||||||| ||| || |||||||| || |
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|
| T |
944070 |
gggagataatggttatagggaggaggatggtggaagaatggagaaagaaaagcacacgcaaagaagagacgaagaatggggtgttatgtatttacaatac |
943971 |
T |
|
| Q |
470 |
cgcctctattttaaggtttaaatacccaaattattcatg |
508 |
Q |
| |
|
|| | ||||||||| |||||||||||||||||||| |
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|
| T |
943970 |
tacc-atgctttaaggttgaaatacccaaattattcatg |
943933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 214 - 353
Target Start/End: Complemental strand, 963355 - 963216
Alignment:
| Q |
214 |
caccaccttctgccgtcttctttctttcgttccatatctcgtattcatctatcattctttaagattatttgtgtttatatgattttcattcgttcttaga |
313 |
Q |
| |
|
|||||||||||| |||| |||||||||| ||||| |||||||||||||||||| |||||| | |||||||||||||||||| ||||||||| || |
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|
| T |
963355 |
caccaccttctgtcgtcgtctttctttcattccaaatctcgtattcatctatctttctttgattccatttgtgtttatatgattcatgttcgttctttga |
963256 |
T |
|
| Q |
314 |
tatagtggtggtcgttgttgataacgatgttggttgtgat |
353 |
Q |
| |
|
| |||| |||||||||||| || |||| |||||||||| |
|
|
| T |
963255 |
gacggtggcggtcgttgttgagaatgatggtggttgtgat |
963216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 214 - 353
Target Start/End: Complemental strand, 944812 - 944670
Alignment:
| Q |
214 |
caccaccttctgccgtcttctttctttcgttccatat---ctcgtattcatctatcattctttaagattatttgtgtttatatgattttcattcgttctt |
310 |
Q |
| |
|
||||||||| || || | |||||||||| |||||||| ||||||||||||||| |||||| | |||||||||||||||||| |||||||| |
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| T |
944812 |
caccaccttttgtcgccgtctttctttcattccatatattctcgtattcatctatatttctttgattccatttgtgtttatatgattcatgttcgttctc |
944713 |
T |
|
| Q |
311 |
agatatagtggtggtcgttgttgataacgatgttggttgtgat |
353 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
944712 |
tgaggcagtggtggtcgttgttgataacgatggtggttgtgat |
944670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 963547 - 963472
Alignment:
| Q |
71 |
caccatccaccaaccttcttcacagatccaactcccatccatcgtcaccactgtcatcaccgtcctcaccaccacc |
146 |
Q |
| |
|
||||| |||||||||||||| || ||||| ||| || ||| |||||||| |||||||||||||||||||| |||| |
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|
| T |
963547 |
caccacccaccaaccttcttttcatatccatctctcacccaccgtcaccaatgtcatcaccgtcctcaccagcacc |
963472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 19634490 - 19634563
Alignment:
| Q |
71 |
caccatccaccaaccttcttcacagatccaactcccatccatcgtcaccactgtcatcaccgtcctcaccacca |
144 |
Q |
| |
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||||| ||| ||||||||||| | |||||| ||| || ||| || ||||||| ||| ||||||||||||||||| |
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|
| T |
19634490 |
caccacccatcaaccttcttctcggatccatctctcacccaccgccaccactatcaccaccgtcctcaccacca |
19634563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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