View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4279_high_4 (Length: 444)

Name: NF4279_high_4
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4279_high_4
NF4279_high_4
[»] chr4 (12 HSPs)
chr4 (1-433)||(28033737-28034168)
chr4 (1-168)||(11422634-11422811)
chr4 (97-169)||(43472979-43473051)
chr4 (1-56)||(43473102-43473157)
chr4 (101-168)||(29907700-29907767)
chr4 (101-168)||(40756295-40756362)
chr4 (104-168)||(17318590-17318654)
chr4 (102-157)||(9741868-9741923)
chr4 (1-64)||(24389060-24389123)
chr4 (101-168)||(50430020-50430087)
chr4 (101-163)||(7104087-7104149)
chr4 (3-57)||(9741978-9742032)
[»] chr2 (5 HSPs)
chr2 (1-169)||(35024975-35025153)
chr2 (103-169)||(5953237-5953303)
chr2 (101-169)||(17539136-17539204)
chr2 (101-168)||(5007353-5007420)
chr2 (8-68)||(38115931-38115991)
[»] chr7 (9 HSPs)
chr7 (1-82)||(31001604-31001686)
chr7 (1-82)||(14054408-14054490)
chr7 (1-82)||(14364436-14364518)
chr7 (101-162)||(11790449-11790510)
chr7 (101-168)||(21416792-21416859)
chr7 (130-165)||(31001739-31001774)
chr7 (97-145)||(14054514-14054562)
chr7 (97-145)||(14364542-14364590)
chr7 (101-169)||(25616265-25616333)
[»] chr5 (6 HSPs)
chr5 (101-168)||(32401577-32401644)
chr5 (1-82)||(43462780-43462862)
chr5 (5-70)||(16055211-16055276)
chr5 (5-67)||(12882998-12883060)
chr5 (111-168)||(27214041-27214098)
chr5 (101-157)||(16055317-16055373)
[»] chr3 (7 HSPs)
chr3 (106-168)||(19624735-19624797)
chr3 (101-168)||(31497125-31497192)
chr3 (101-147)||(46513368-46513414)
chr3 (1-82)||(19650511-19650592)
chr3 (1-62)||(1661400-1661461)
chr3 (130-167)||(9606586-9606623)
chr3 (1-82)||(46513258-46513339)
[»] chr6 (4 HSPs)
chr6 (104-168)||(29618440-29618504)
chr6 (101-168)||(34182137-34182204)
chr6 (101-168)||(35241715-35241782)
chr6 (41-82)||(34182233-34182274)
[»] chr1 (3 HSPs)
chr1 (101-163)||(43543992-43544054)
chr1 (101-147)||(2740115-2740161)
chr1 (1-38)||(1257178-1257215)
[»] scaffold0785 (1 HSPs)
scaffold0785 (101-162)||(480-541)
[»] scaffold0129 (1 HSPs)
scaffold0129 (104-157)||(44550-44603)
[»] scaffold0578 (1 HSPs)
scaffold0578 (101-168)||(4258-4325)
[»] chr8 (7 HSPs)
chr8 (101-168)||(2537683-2537750)
chr8 (101-163)||(19237846-19237908)
chr8 (101-163)||(19311030-19311092)
chr8 (105-162)||(9492499-9492556)
chr8 (101-162)||(25481803-25481864)
chr8 (101-164)||(14154357-14154420)
chr8 (109-162)||(7027809-7027862)
[»] scaffold0902 (1 HSPs)
scaffold0902 (101-168)||(2237-2303)


Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 28033737 - 28034168
Alignment:
Q  1 catcaacaatctcccacctatctcggctctcttattgaatattgtattagttttaatgtttgttttcgtaattaaattttttagcgcgcgaagctaaaat 100  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |    
T  28033737 catcaacaatctctcacctatgtcggctctcttattgaatattgtattagttttaatgtttgttt-cgtaattaaattttttagcgcccgaagctaaagt 28033835  T
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccaccttactcatatcttagccacattatctcttgaacc 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || ||||||||||||||||||||    
T  28033836 tgcttattatttagctaaatacgctctttataatttagattgcatatgaatagaagagactccaccttactcacatttttgccacattatctcttgaacc 28033935  T
Q  201 ctacttaagcatcgaagcacatgcaaatacaccacctcctctataaataaggactcgcggaggatgtcgtaaagctttctacacaatattttaagcatat 300  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| || ||||||||||||||||||||    
T  28033936 ctacttaagcatcgaagcacatgcaaatacaccacctcctctgtaaataaggactcgcggaggacgacgtaaagctctccacacaatattttaagcatat 28034035  T
Q  301 gaaggttcttaaaatgaagcccgtcattatccttcaagacatgtacgcaactttttctaaaaaatcaaatgacatttatgcttataagcattggatcccc 400  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  28034036 gaaggttcttaaaatgaagcccgtcattatccttcaagacacatacgcaactttttctaagaaatcaaatgacatttatgcttataagcgttggatcccc 28034135  T
Q  401 aaatgaaatcacgataaactttttatgcttcat 433  Q
    |||||||||||||||||||||||||||||||||    
T  28034136 aaatgaaatcacgataaactttttatgcttcat 28034168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 11422811 - 11422634
Alignment:
Q  1 catcaacaatctcccacctatctcggctctcttattgaatattgtattagttttaatgtttgttttcgtaatt-----aaatttt---ttagcgcgcgaa 92  Q
    |||||||||||| |||||||| |||||||| |||||||| |||||||||| || | |||||||||||||| ||     ||||||    |||| ||  |||    
T  11422811 catcaacaatcttccacctatttcggctctattattgaagattgtattagcttaagtgtttgttttcgtagtttaaaaaaatttcatgttag-gcatgaa 11422713  T
Q  93 gctaa---aattgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    || ||   | |||||||||||||| ||||| | |||||| ||||||||||||||||||| |||||||||||||||||||    
T  11422712 gccaatcaagttgctcattatttatctaaacatgctcttcataatttagattgcatatggatcgaagagactccacctt 11422634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 43473051 - 43472979
Alignment:
Q  97 aaattgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctta 169  Q
    ||||| ||||||||||||||||||| |||||  | ||| ||||||||||||| ||||||||||||| ||||||    
T  43473051 aaatttctcattatttagctaaatatgctctgcaaaatgtagattgcatatggatcgaagagactctacctta 43472979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 43473157 - 43473102
Alignment:
Q  1 catcaacaatctcccacctatctcggctctcttattgaatattgtattagttttaa 56  Q
    ||||||||||||||||||||| |||||||| |||||| | ||||||||||||||||    
T  43473157 catcaacaatctcccacctatgtcggctctattattggagattgtattagttttaa 43473102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 29907767 - 29907700
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    ||||||||||||||||||||| ||| || | ||||||||||||||||| || ||||| ||||| ||||    
T  29907767 tgctcattatttagctaaatatgctattaagaatttagattgcatatggattgaagaaactccgcctt 29907700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 40756362 - 40756295
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    ||||||||||||||| ||||| |||||| | ||||||||||||||||| ||| |||| ||||| ||||    
T  40756362 tgctcattatttagcaaaatatgctcttaagaatttagattgcatatggatcaaagaaactccgcctt 40756295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 17318654 - 17318590
Alignment:
Q  104 tcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    |||||| |||||||| || |||||| | ||||||||||||||||| |||||||| ||||| ||||    
T  17318654 tcattacttagctaattatgctcttaagaatttagattgcatatggatcgaagaaactccgcctt 17318590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 9741923 - 9741868
Alignment:
Q  102 gctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaaga 157  Q
    |||||| ||||||||||||| | |||| ||||||||||||||||||| || |||||    
T  9741923 gctcatcatttagctaaatatgatcttcataatttagattgcatatggattgaaga 9741868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 24389060 - 24389123
Alignment:
Q  1 catcaacaatctcccacctatctcggctctcttattgaatattgtattagttttaatgtttgtt 64  Q
    ||||||||||||| ||||||| | || ||| |||||| | ||||||||| ||||||||||||||    
T  24389060 catcaacaatctcacacctatgttggatctattattggagattgtattaattttaatgtttgtt 24389123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 50430020 - 50430087
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    ||||||||||||||||||||| | |||  |||||| | ||||||||||  ||||||||||||| ||||    
T  50430020 tgctcattatttagctaaatatgatctacataattcaaattgcatatgggtcgaagagactccgcctt 50430087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 7104087 - 7104149
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactcc 163  Q
    |||| |||||||||||||||| |||||| | |||||| ||||||||||  ||||||| |||||    
T  7104087 tgcttattatttagctaaatatgctcttaagaatttaaattgcatatgggtcgaagaaactcc 7104149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 9742032 - 9741978
Alignment:
Q  3 tcaacaatctcccacctatctcggctctcttattgaatattgtattagttttaat 57  Q
    ||||||||||||||||||| |  ||||| |||||| | |||||||||||||||||    
T  9742032 tcaacaatctcccacctatgtttgctctattattggagattgtattagttttaat 9741978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 35025153 - 35024975
Alignment:
Q  1 catcaacaatctcccacctatctcggctctcttattgaatattgtattagttttaatgtttgttttcgtaattaaattttttagc-------gcgcgaag 93  Q
    |||||||||||| |||||||| |||||||| |||||| | ||||||||||||| |||||||||||||||| || || ||||| ||       ||| ||||    
T  35025153 catcaacaatcttccacctatgtcggctctattattggagattgtattagtttcaatgtttgttttcgtagtttaaattttttgcatgttaggcgtgaag 35025054  T
Q  94 cta---aaattgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctta 169  Q
    |||   | | | ||||||||||||| ||| | |||||| ||||||| ||||||||||  ||| ||||||||||||||||    
T  35025053 ctaaccagactactcattatttagcaaaacatgctcttcataatttggattgcatatagatcaaagagactccacctta 35024975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 5953303 - 5953237
Alignment:
Q  103 ctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctta 169  Q
    ||||||||||||||||||| |  |||| || |||||||||||||| |||| ||||||||||||||||    
T  5953303 ctcattatttagctaaatatgtcctttgtagtttagattgcatataaatcaaagagactccacctta 5953237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 17539136 - 17539204
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctta 169  Q
    ||||||||||||| |||||||||||||| | ||| ||||||||||||| |||||| | ||||| |||||    
T  17539136 tgctcattatttaactaaatacgctcttaagaatgtagattgcatatggatcgaaaaaactccgcctta 17539204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 5007420 - 5007353
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    ||||||||||||||||||||| ||| || | |||||||||||||||||  ||||||| ||||| ||||    
T  5007420 tgctcattatttagctaaatatgcttttaagaatttagattgcatatgggtcgaagaaactccgcctt 5007353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 38115931 - 38115991
Alignment:
Q  8 aatctcccacctatctcggctctcttattgaatattgtattagttttaatgtttgttttcg 68  Q
    ||||| |||||||| ||| || | |||| ||| ||||||||||||||||||||||||||||    
T  38115931 aatcttccacctatatcgactttattatcgaagattgtattagttttaatgtttgttttcg 38115991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31001604 - 31001686
Alignment:
Q  1 catcaacaatctcccacctatctcggctctcttattgaatattgtattagttttaatgtttgttttcgta-attaaatttttt 82  Q
    |||||||||||| |||||||| |||||||  |||||||| ||||||||||||| ||||||||||||||||  |||||||||||    
T  31001604 catcaacaatcttccacctatatcggctcaattattgaagattgtattagtttcaatgtttgttttcgtagtttaaatttttt 31001686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 14054408 - 14054490
Alignment:
Q  1 catcaacaatctcccacctatctcggctctcttattgaatattgtattagttttaatgtttgttttcgta-attaaatttttt 82  Q
    ||||||||||||||||| |||  || |||| |||||| | ||||||||| |||| |||||||||||||||  |||||||||||    
T  14054408 catcaacaatctcccacgtatgccgactctattattgtagattgtattaattttgatgtttgttttcgtagtttaaatttttt 14054490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 14364436 - 14364518
Alignment:
Q  1 catcaacaatctcccacctatctcggctctcttattgaatattgtattagttttaatgtttgttttcgta-attaaatttttt 82  Q
    ||||||||||||||||| |||  || |||| |||||| | ||||||||| |||| |||||||||||||||  |||||||||||    
T  14364436 catcaacaatctcccacgtatgccgactctattattgtagattgtattaattttgatgtttgttttcgtagtttaaatttttt 14364518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 11790510 - 11790449
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactc 162  Q
    ||||||||||||||||||||| | |||| | ||| ||||||||||||| |||||||| ||||    
T  11790510 tgctcattatttagctaaatatgatcttaagaatctagattgcatatggatcgaagaaactc 11790449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 21416792 - 21416859
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    |||||||||||||| |||| | |||||| |||||||||||||||| || ||| || ||||| ||||||    
T  21416792 tgctcattatttagataaacatgctcttcataatttagattgcatctggatcaaaaagacttcacctt 21416859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 165
Target Start/End: Original strand, 31001739 - 31001774
Alignment:
Q  130 ataatttagattgcatatgaatcgaagagactccac 165  Q
    |||||||||||||||||||||||||||||| |||||    
T  31001739 ataatttagattgcatatgaatcgaagagattccac 31001774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 14054514 - 14054562
Alignment:
Q  97 aaattgctcattatttagctaaatacgctctttataatttagattgcat 145  Q
    ||||||||| ||| ||||||||||||  |||| ||||||||||||||||    
T  14054514 aaattgctcgttacttagctaaatacattcttcataatttagattgcat 14054562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 14364542 - 14364590
Alignment:
Q  97 aaattgctcattatttagctaaatacgctctttataatttagattgcat 145  Q
    ||||||||| ||| ||||||||||||  |||| ||||||||||||||||    
T  14364542 aaattgctcgttacttagctaaatacattcttcataatttagattgcat 14364590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 25616333 - 25616265
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctta 169  Q
    ||||||||||||||| ||||| ||| || | ||||||||||||||| | || ||||| ||||| |||||    
T  25616333 tgctcattatttagcaaaatatgcttttaagaatttagattgcatacggattgaagaaactccgcctta 25616265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 32401644 - 32401577
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||||| |||||||| ||||| ||||    
T  32401644 tgctcattatttagctaaatatgctcttaagaatttagattgcatatggatcgaagaaactccgcctt 32401577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 43462780 - 43462862
Alignment:
Q  1 catcaacaatctcccacctatctcggctctcttattgaatattgtattagttttaatgtttgttttcgta-attaaatttttt 82  Q
    |||| ||||||||| |||||| |||| ||| |||||| | ||||||||| ||||||||||||||||||||  |||||||||||    
T  43462780 catcgacaatctcctacctatatcggttctattattggagattgtattatttttaatgtttgttttcgtagtttaaatttttt 43462862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 16055211 - 16055276
Alignment:
Q  5 aacaatctcccacctatctcggctctcttattgaatattgtattagttttaatgtttgttttcgta 70  Q
    |||| |||||||||||| |||||||| |||||| | ||||||||  ||||||||||||||||||||    
T  16055211 aacattctcccacctatgtcggctctattattgtagattgtatttattttaatgtttgttttcgta 16055276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 12883060 - 12882998
Alignment:
Q  5 aacaatctcccacctatctcggctctcttattgaatattgtattagttttaatgtttgttttc 67  Q
    ||||||||||||||||  |||||| | |||||| | ||||||||||||||||||||| |||||    
T  12883060 aacaatctcccacctacgtcggctttattattggagattgtattagttttaatgtttcttttc 12882998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 27214098 - 27214041
Alignment:
Q  111 ttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    ||||||||| | |||||| ||||||||||||||||||| || |||||||||| |||||    
T  27214098 ttagctaaacatgctcttcataatttagattgcatatggattgaagagactctacctt 27214041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 16055317 - 16055373
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaaga 157  Q
    |||||||||||||| |||||||| ||||  |||||||||||| ||||| ||||||||    
T  16055317 tgctcattatttagttaaatacgttcttcgtaatttagattgtatatggatcgaaga 16055373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 19624797 - 19624735
Alignment:
Q  106 attatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    ||||||||||||| || |||||||||||||||||||||||||| |||||||||| | ||||||    
T  19624797 attatttagctaagtatgctctttataatttagattgcatatggatcgaagagatttcacctt 19624735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 31497125 - 31497192
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    |||| |||||||||||||| | |||||| ||||||||||||||||||  ||||||||| || ||||||    
T  31497125 tgcttattatttagctaaacatgctcttcataatttagattgcatatagatcgaagagtctacacctt 31497192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 46513368 - 46513414
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatat 147  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||||    
T  46513368 tgctcattatttagctaaatacgttcttcataattcagattgcatat 46513414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 19650592 - 19650511
Alignment:
Q  1 catcaacaatctcccacctatctcggctctcttattgaatattgtattagttttaatgtttgttttcgtaattaaatttttt 82  Q
    ||||||| |||| |||| ||| |||||||| |||||  | ||||||||||||| |||| ||||||||||| || ||||||||    
T  19650592 catcaactatcttccacatatatcggctctattatttgagattgtattagtttcaatgcttgttttcgtagtttaatttttt 19650511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1661461 - 1661400
Alignment:
Q  1 catcaacaatctcccacctatctcggctctcttattgaatattgtattagttttaatgtttg 62  Q
    |||||| ||||| |||||||| |  ||||| |||||| | ||||||||||||||||||||||    
T  1661461 catcaataatcttccacctatgtttgctctattattggagattgtattagttttaatgtttg 1661400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 9606586 - 9606623
Alignment:
Q  130 ataatttagattgcatatgaatcgaagagactccacct 167  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  9606586 ataatttagattgcatatggatcaaagagactccacct 9606623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 46513258 - 46513339
Alignment:
Q  1 catcaacaatctcccacctatctcggctctcttattgaatattgtattagttttaatgtttgttttcgtaattaaatttttt 82  Q
    |||| ||||||| |||||||| ||| |  | |||||| | |||||||||||||||| |||| |||||||| || ||||||||    
T  46513258 catccacaatcttccacctatgtcgtcaatattattggagattgtattagttttaacgtttattttcgtagtttaatttttt 46513339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 29618504 - 29618440
Alignment:
Q  104 tcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    ||||||||||| |||||| |||||| | ||||||||||||||||| |||||||| ||||||||||    
T  29618504 tcattatttagttaaatatgctcttaagaatttagattgcatatggatcgaagaaactccacctt 29618440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 34182204 - 34182137
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||   |||||| ||| ||||||||    
T  34182204 tgctcattatttagctaaatatgttcttcataatttagattgcatacagatcgaatagattccacctt 34182137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 35241782 - 35241715
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    ||||||||||||||||||||| | |||| | ||||||||||||||||   ||||||| ||||| ||||    
T  35241782 tgctcattatttagctaaatatgttcttaagaatttagattgcatataggtcgaagaaactccgcctt 35241715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 34182274 - 34182233
Alignment:
Q  41 attgtattagttttaatgtttgttttcgtaattaaatttttt 82  Q
    ||||||||| |||||||||||||||||||| || ||||||||    
T  34182274 attgtattaattttaatgtttgttttcgtagtttaatttttt 34182233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 43543992 - 43544054
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactcc 163  Q
    ||||||||||||||||||||  |||||| | ||||||||||||||||| |||||||| |||||    
T  43543992 tgctcattatttagctaaatttgctcttaagaatttagattgcatatggatcgaagaaactcc 43544054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 2740161 - 2740115
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatat 147  Q
    |||||||||||||| |||||| ||||||||||||| |||||||||||    
T  2740161 tgctcattatttagttaaatatgctctttataattcagattgcatat 2740115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1257215 - 1257178
Alignment:
Q  1 catcaacaatctcccacctatctcggctctcttattga 38  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  1257215 catcaacaatctcccacctatgtcggctctattattga 1257178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 480 - 541
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactc 162  Q
    ||||||||||||||||||||| ||| || | |||||||||||||||||||| ||||| ||||    
T  480 tgctcattatttagctaaatatgctattaagaatttagattgcatatgaattgaagaaactc 541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 44603 - 44550
Alignment:
Q  104 tcattatttagctaaatacgctctttataatttagattgcatatgaatcgaaga 157  Q
    |||||||||||||||||| |||||| | ||||||||||||||||| ||||||||    
T  44603 tcattatttagctaaatatgctcttaagaatttagattgcatatggatcgaaga 44550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 4258 - 4325
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    ||||||||||||||||||||| ||| || | |||||||||||||||||  ||||||| ||||| ||||    
T  4258 tgctcattatttagctaaatatgcttttaagaatttagattgcatatgggtcgaagaaactccgcctt 4325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 2537750 - 2537683
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    ||||||||||||||||||| | | | || |||||||||||  |||||| |||||||||||||||||||    
T  2537750 tgctcattatttagctaaacatgtttttcataatttagatcacatatggatcgaagagactccacctt 2537683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 19237846 - 19237908
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactcc 163  Q
    |||||||||||||||| |||| |||||| | |||| ||||||||||||||| ||||| |||||    
T  19237846 tgctcattatttagctgaatatgctcttaagaattcagattgcatatgaattgaagaaactcc 19237908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 19311030 - 19311092
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactcc 163  Q
    |||||||||||||||| |||| |||||| | |||| ||||||||||||||| ||||| |||||    
T  19311030 tgctcattatttagctgaatatgctcttaagaattcagattgcatatgaattgaagaaactcc 19311092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 9492556 - 9492499
Alignment:
Q  105 cattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactc 162  Q
    ||||||||||||||||| |||||| | ||||||||||||||||| || ||||| ||||    
T  9492556 cattatttagctaaatatgctcttaagaatttagattgcatatggattgaagaaactc 9492499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 25481864 - 25481803
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactc 162  Q
    ||||||||||||||||||||| ||| || | || ||||||||||||||||| ||||| ||||    
T  25481864 tgctcattatttagctaaatatgctattaagaaattagattgcatatgaattgaagaaactc 25481803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 14154357 - 14154420
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactcca 164  Q
    ||||||||||||||| |||||  ||||| | ||||||||||||||||| || ||||| ||||||    
T  14154357 tgctcattatttagcaaaatatcctcttaagaatttagattgcatatggattgaagaaactcca 14154420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 7027862 - 7027809
Alignment:
Q  109 atttagctaaatacgctctttataatttagattgcatatgaatcgaagagactc 162  Q
    ||||||||||||| |||||| | |||| |||||||||||| |||||||| ||||    
T  7027862 atttagctaaatatgctcttaagaattcagattgcatatggatcgaagaaactc 7027809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 2237 - 2303
Alignment:
Q  101 tgctcattatttagctaaatacgctctttataatttagattgcatatgaatcgaagagactccacctt 168  Q
    |||||||||||| ||||| || |||||| | ||||||||||||||||| |||||||| ||||| ||||    
T  2237 tgctcattattttgctaa-tatgctcttaagaatttagattgcatatggatcgaagaaactccgcctt 2303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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