View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4279_high_7 (Length: 369)
Name: NF4279_high_7
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279_high_7 |
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| [»] scaffold0419 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 212 - 355
Target Start/End: Complemental strand, 35006388 - 35006245
Alignment:
| Q |
212 |
gggtcttccatacatctatcacacttaatactagaagtcatcatcaacattatgactctttcttcaattgtgagaagtcttccatgaacagttttccaca |
311 |
Q |
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| T |
35006388 |
gggtcttccatacatctatcacacttgatactacaagtcatcatcaacattatgactctttattcaattgtgagaagtcttccatgaacagttttccaca |
35006289 |
T |
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| Q |
312 |
aagtatatctaattctagttggtcccttacacttccaatttttg |
355 |
Q |
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| T |
35006288 |
aagtatatctaattctagttggtcccttacacttccaatttttg |
35006245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 35006636 - 35006436
Alignment:
| Q |
19 |
gagttagtgaaacacaccttcgggatactttcgctaaacattttgtcgctataaatatctttt---------------------aaaagtataatgaaat |
97 |
Q |
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| T |
35006636 |
gagttagtgaaacacacgttcggaatactttcgctaaacattttgtcgctataaatatcttttcccatttgtaaattgatatgtaaaagtataatgaaat |
35006537 |
T |
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| Q |
98 |
aaattaacctaggaaggccccaataatatgaagacagacaaatcctaatgtagaatagtattaag--tgtgatggatgtatggaagacctaaaatcaatt |
195 |
Q |
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| T |
35006536 |
aaattaacctaggaaggccccaataatatgaagacagacaaatcctaatgtagactactattaagtgtgtgatagatgtatggaagactcaaaatcaatt |
35006437 |
T |
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| Q |
196 |
t |
196 |
Q |
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| T |
35006436 |
t |
35006436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 16882896 - 16882841
Alignment:
| Q |
294 |
catgaacagttttccacaaagtatatctaattctagttggtcccttacacttccaa |
349 |
Q |
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| T |
16882896 |
catgagcaattttccacaaagtggctctaattctagttggtcccttccacttccaa |
16882841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 35006356 - 35006399
Alignment:
| Q |
153 |
tagtattaagtgtgatggatgtatggaagacctaaaatcaattt |
196 |
Q |
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| T |
35006356 |
tagtatcaagtgtgatagatgtatggaagacccaaaatcaattt |
35006399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 3974614 - 3974661
Alignment:
| Q |
13 |
aatattgagttagtgaaacacaccttcgggatactttcgctaaacatt |
60 |
Q |
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| T |
3974614 |
aatattgagttagtgaaacacacattcgagatattttcgctaaacatt |
3974661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 746 - 670
Alignment:
| Q |
266 |
actctttcttcaattgtgagaagtcttccatgaacagttttccacaaagtatatctaattctagttggtcccttaca |
342 |
Q |
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| T |
746 |
actctttcttcatttgtgagaagtttttcggaaacaattttccacaaattggttctatttctagttggtcccttaca |
670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 28874080 - 28874004
Alignment:
| Q |
266 |
actctttcttcaattgtgagaagtcttccatgaacagttttccacaaagtatatctaattctagttggtcccttaca |
342 |
Q |
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| T |
28874080 |
actctttcttcatttgtgagaagtttttcggaaacaattttccacaaattggttctatttctagttggtcccttaca |
28874004 |
T |
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