View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4279_low_11 (Length: 306)
Name: NF4279_low_11
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279_low_11 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 53 - 303
Target Start/End: Complemental strand, 37882609 - 37882362
Alignment:
| Q |
53 |
acgagcagaacctgtgttgtattgcaacaaccttcacagtcttcatataaaacgtttattgataatcatcnnnnnnnnatttcatagattagagaaaatt |
152 |
Q |
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| T |
37882609 |
acgagcagcaactgtgttgtattgcaacaaccttcacagtcttcatataaaacgtttattgataatcatcttttt---atttcatagattagagaaaatt |
37882513 |
T |
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| Q |
153 |
ttaacaagttaaggatattaagagatagtgagttggaaacaagggaaacttggtcttttcggtgttctcttaaaaacacgcgggcgtactccttgcttct |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37882512 |
ttaacaagttaaggatattaagagatagtgagttggaaacaagggaaacttggttttttcggtgttctcttaaaaacacgcgggcgtactccttgcttct |
37882413 |
T |
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| Q |
253 |
ggggacattgatccaaagctcgagtacggtccgtgcgccgtttttcttctc |
303 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37882412 |
ggggacattgatccgaagctcgagtacggtccgtgcgccgtttttcttctc |
37882362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 202 - 303
Target Start/End: Original strand, 14752 - 14853
Alignment:
| Q |
202 |
ttggtcttttcggtgttctcttaaaaacacgcgggcgtactccttgcttctggggacattgatccaaagctcgagtacggtccgtgcgccgtttttcttc |
301 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14752 |
ttggttttttcggtgttctcttaaaaacacgcgggcgtactccttgcttctggggacattgatccgaagctcgagtacggtccgtgcgccgtttttcttc |
14851 |
T |
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| Q |
302 |
tc |
303 |
Q |
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|| |
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| T |
14852 |
tc |
14853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 303
Target Start/End: Original strand, 17604524 - 17604610
Alignment:
| Q |
217 |
ttctcttaaaaacacgcgggcgtactccttgcttctggggacattgatccaaagctcgagtacggtccgtgcgccgtttttcttctc |
303 |
Q |
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|||||||||||||| ||||| ||||| |||||| |||||||||||||| |||||||||||||||| || ||||||||||||||| |
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| T |
17604524 |
ttctcttaaaaacaatcgggcatactctttgcttatggggacattgatctgaagctcgagtacggtctatgtgccgtttttcttctc |
17604610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 51195790 - 51195826
Alignment:
| Q |
267 |
aaagctcgagtacggtccgtgcgccgtttttcttctc |
303 |
Q |
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|||||| ||||||||||||||||| |||||||||||| |
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| T |
51195790 |
aaagctggagtacggtccgtgcgcggtttttcttctc |
51195826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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