View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4279_low_12 (Length: 287)
Name: NF4279_low_12
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 29006608 - 29006860
Alignment:
| Q |
17 |
aatatctagcataaataaaaaatcataaaaattgacgacaatagggatgacaatagcacaatagcataaacaaattataaaaattgaccacaaaaccaat |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006608 |
aatatctagcataaataaaa-atcataaaaattgacgacaatagggatgacaatagcacaatagcataaacaaattataaaaattgaccacaaaaccaat |
29006706 |
T |
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| Q |
117 |
caacttaatcctacgcattctagactgagtcgtgatgatagtagttgattattatgaagtcaatggaagttattggcggcaaagttattgaattagcagc |
216 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006707 |
caacttaatcctatgcattctagactgagtcgtgatga---tagttgattattatgaagtcaatggaagttattggcggcaaagttattgaattagcagc |
29006803 |
T |
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| Q |
217 |
aatcaggtgcgtaatgcacacgtatcttagactagactcccgaacccaccaaccaat |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29006804 |
aatcaggtgcgtaatgcacacgtatcttagactagactccccaacccaccaaccaat |
29006860 |
T |
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