View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4279_low_14 (Length: 269)
Name: NF4279_low_14
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 51064547 - 51064306
Alignment:
| Q |
11 |
cagagatcaactacgtctttcatggacaacaaaggaaagtagtaagtgcactgaacatatt-tatagtctttcacgccatacttttataaatttctacta |
109 |
Q |
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| T |
51064547 |
cagacatcaactacgtctttcatggacaacaaaggaaagtagtaagtgcactgaacatattatatagtctttcacgccatacttttataaatttctacta |
51064448 |
T |
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| Q |
110 |
caattctagaagtgttacaatttttctaaatactatatgcctcgattttattattttatggatacctttgttattatgtagaggacagttcttaaatttg |
209 |
Q |
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| T |
51064447 |
caattctagaagtgttacaatttttctaaataatatatgcctccattttattattttatggatacctttgttaatatgtagaggacagttgttaaatttg |
51064348 |
T |
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| Q |
210 |
atatgaagttcttaccatgatgtatgtttttatgctatagtg |
251 |
Q |
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| T |
51064347 |
atatgaagttcttaccatgatgtatgtttttatgctatagtg |
51064306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 51035872 - 51035807
Alignment:
| Q |
16 |
atcaactacgtctttcatggacaacaaaggaaagtagtaagtgcactgaacatatt-tatagtctt |
80 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| |
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| T |
51035872 |
atcaaccacgtctttcatggacaacaaaggaaaacagtaagtgcactgatcatattatatagtctt |
51035807 |
T |
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