View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4279_low_15 (Length: 264)
Name: NF4279_low_15
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 43219059 - 43218823
Alignment:
| Q |
20 |
caatggctatgtaagttttcctgtttatatttttgtagtgtgggattgattcaacacttagaatgaatgtgattaactaattcatcctttgtgtgacagg |
119 |
Q |
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| T |
43219059 |
caatggctatgtaagttttccggtttatatttttgtagtgtgggattgattcaacacttagaatgaatgtgattaactaattcatcctttgtgtgacagg |
43218960 |
T |
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| Q |
120 |
aattagctggaaatttcttgactgttagtaaggatgatataagaaatacactacctgatctcccaaaacgcccacgcgcatttgattctccttttagtgt |
219 |
Q |
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| T |
43218959 |
aattagctggaaatttcttgactgttagtaaggatgatataagaaatacactacctgatctcccaaaacgcccacacgcatttgattctccttttagtgt |
43218860 |
T |
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| Q |
220 |
ctatgttactaagttgtcacggagtattgagaataat |
256 |
Q |
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| T |
43218859 |
ctatgttactaagttgtcacggagtattgagaataat |
43218823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 43222468 - 43222412
Alignment:
| Q |
96 |
ctaattcatcctttgtgtgacaggaattagctggaaatttcttgactgttagtaagg |
152 |
Q |
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| T |
43222468 |
ctaattcaccctttgtgtgacaggaattagatggaagattgttgacagttaataagg |
43222412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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