View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4279_low_17 (Length: 247)

Name: NF4279_low_17
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4279_low_17
NF4279_low_17
[»] chr2 (2 HSPs)
chr2 (24-242)||(16949638-16949856)
chr2 (24-242)||(17020303-17020521)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 16949856 - 16949638
Alignment:
Q  24 gtaaattcttagttactccctctcttgtttgaccaaattaagtttcaatctttattgaattttgcaccctgcaatgccaggaacaatcatggtttcaggt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16949856 gtaaattcttagttactccctctcttgtttgaccaaattaagtttcaatctttattgaattttgcaccctgcaatgccaggaacaatcatggtttcaggt 16949757  T
Q  124 actaaattttatttagcatatacaattcaagcatcttaaccacatgttgattttctttttgacttctctatattgatttttattatagtgctggaattca 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16949756 actaaattttatttagcatatacaattcaagcatcttaaccacatgttgattttctttttgacttctctatattgatttttattatagtgctggaattca 16949657  T
Q  224 tggatcttccatattcttc 242  Q
    |||||||||||| ||||||    
T  16949656 tggatcttccattttcttc 16949638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 17020521 - 17020303
Alignment:
Q  24 gtaaattcttagttactccctctcttgtttgaccaaattaagtttcaatctttattgaattttgcaccctgcaatgccaggaacaatcatggtttcaggt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17020521 gtaaattcttagttactccctctcttgtttgaccaaattaagtttcaatctttattgaattttgcaccctgcaatgccaggaacaatcatggtttcaggt 17020422  T
Q  124 actaaattttatttagcatatacaattcaagcatcttaaccacatgttgattttctttttgacttctctatattgatttttattatagtgctggaattca 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17020421 actaaattttatttagcatatacaattcaagcatcttaaccacatgttgattttctttttgacttctctatattgatttttattatagtgctggaattca 17020322  T
Q  224 tggatcttccatattcttc 242  Q
    |||||||||||| ||||||    
T  17020321 tggatcttccattttcttc 17020303  T

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