View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4279_low_18 (Length: 238)
Name: NF4279_low_18
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41588254 - 41588474
Alignment:
| Q |
1 |
cgcgtaattcgcttaaaactcctcaccggaattgcaccatcaccattaccagttgcaactgcagcaccttgttgttctaacacggtcaatttatcctctc |
100 |
Q |
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| T |
41588254 |
cgcgtaattcgcttaaaactcctcaccggaattgcaccatcaccattaccagttgcaactgcagcaccttgttgttctaacacggtcaccttatcctctc |
41588353 |
T |
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| Q |
101 |
cggattcaaccttttctttcatcgccgatcgagtaattcgcttgaaattcttcaccggcacctcaccatcacctttaccaactgcaacagcatcaccttc |
200 |
Q |
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| T |
41588354 |
cggattcaaccttttctttcatcgccgatcgagtaattcgcttgaaattcttcaccggcacctcaccatcacctttaccaactgcaacagcatcaccttc |
41588453 |
T |
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| Q |
201 |
acctcgctgttctaacacagt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
41588454 |
acctcgctgttctaacacagt |
41588474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 199
Target Start/End: Original strand, 41588165 - 41588323
Alignment:
| Q |
41 |
caccattaccagttgcaactgcagcaccttgttgttctaacacggtcaatttatcctctccggattcaaccttttctttcatcgccgatcgagtaattcg |
140 |
Q |
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|||||| |||| ||||||||||||||||||||| ||||||||| | | | | ||||| ||||||||||| ||||||||| |||||||||| |||||||| |
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| T |
41588165 |
caccatcaccacttgcaactgcagcaccttgttcttctaacacattgactgtctcctcgccggattcaactttttctttcttcgccgatcgcgtaattcg |
41588264 |
T |
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| Q |
141 |
cttgaaattcttcaccggcacctcaccatcacctttaccaactgcaacagcatcacctt |
199 |
Q |
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||| ||| || ||||||| | |||||||||| |||||| |||||| ||| |||||| |
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| T |
41588265 |
cttaaaactcctcaccggaattgcaccatcaccattaccagttgcaactgcagcacctt |
41588323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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