View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4279_low_20 (Length: 232)
Name: NF4279_low_20
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279_low_20 |
 | |
|
| [»] chr5 (5 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 42800148 - 42799917
Alignment:
| Q |
1 |
taaatatatgtgttttgagttccaaaaggcaatacttttttctcatgtttgaatccaaaatgtcactatctgtttctgaattaattagtcaaagcttatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42800148 |
taaatatatgtgttttgagttccaaaagacaatacttttttgtcatgtttgaatccaaaatgtcactatctgtttctgaattaattagtcaaagcttatc |
42800049 |
T |
|
| Q |
101 |
ttgttgcttttacaatgattttgagatattaaaacactagtaatttctgttatattagttttcaaatttatattacatttccaactcatttctgcagcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42800048 |
ttgttgcttttacaatgattttgagatattaaaacactagtaatttctgttatattagttttcaaatttatattacatttccaactcatttgtgcagcat |
42799949 |
T |
|
| Q |
201 |
gtacttgtggctaatattactagcactttgaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42799948 |
gtacttgtggctaatattactagcactttgaa |
42799917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 25514190 - 25514424
Alignment:
| Q |
1 |
taaatatatgtgttttgagttccaaaaggcaatacttttttctcatgtttgaatccaaaatgtcactatctgtttctgaattaattagtcaaagcttatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| |||||||||||||| || || || ||||||| | ||||||||||||||||| ||| |
|
|
| T |
25514190 |
taaatatatgtgttttgagttccaaaagacattacttttttgtcatgtttgaatccgaacagtagctttctgtttataaattaattagtcaaagcctatt |
25514289 |
T |
|
| Q |
101 |
ttgttgcttttacaatgattttgagatattaaaacactagtaatttctgttatattagttttcaaatttatattacatttccaactcatttctgcagcat |
200 |
Q |
| |
|
|||||||||||| ||| |||||||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25514290 |
ttgttgcttttagaattattttgagatatcaaaacactagcaagttctgttatattagttttcaaatttaaattacatttccaactcatttctgcagcat |
25514389 |
T |
|
| Q |
201 |
gtacttgtggc---taatattactagcactttgaa |
232 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
25514390 |
gtacttgtggctaataatattactagcactttgaa |
25514424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 25521170 - 25520977
Alignment:
| Q |
1 |
taaatatatgtgttttgagttccaaaaggcaatacttttttctcatgtttgaatccaaaatgtcactatctgtttctgaattaattagtcaaagcttatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| |||||||||||||| || || || ||||||| | ||||||||||||||||| ||| |
|
|
| T |
25521170 |
taaatatatgtgttttgagttccaaaagacattacttttttgtcatgtttgaatccgaacagtagctttctgtttataaattaattagtcaaagcctatt |
25521071 |
T |
|
| Q |
101 |
ttgttgcttttacaatgattttgagatattaaaacactagtaatttctgttatattagttttcaaatttatattacatttccaactcatttctg |
194 |
Q |
| |
|
|||||||||||| ||| |||||||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25521070 |
ttgttgcttttagaattattttgagatatcaaaacactagcaagttctgttatattagttttcaaatttaaattacatttccaactcatttctg |
25520977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 42803175 - 42803104
Alignment:
| Q |
69 |
tctgtttctgaattaattagtcaaagcttatcttgttgcttttacaatgattttgagatattaaaacactag |
140 |
Q |
| |
|
||||||| |||||||||||||| |||| ||| || ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42803175 |
tctgtttatgaattaattagtcgaagcctattttaatgcttttacaatgattttgagatatcaaaacactag |
42803104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42803277 - 42803219
Alignment:
| Q |
1 |
taaatatatgtgttttgagttccaaaaggcaatacttttttctcatgtttgaatccaaa |
59 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||||||| ||| ||||||||||||| |
|
|
| T |
42803277 |
taaatatatgtgttttgagttctaaaagacattacttttttgtcaagtttgaatccaaa |
42803219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 27907007 - 27906782
Alignment:
| Q |
6 |
atatgtgttttgagttccaaaaggcaatacttttttctcatgtttgaatccaaaatgtcactatctgtttctgaattaattagtcaaagcttatcttgtt |
105 |
Q |
| |
|
||||||||||||||||||||||| || |||||| || ||||||||||||| || || || || |||| |||||||||||||| |||| ||| ||||| |
|
|
| T |
27907007 |
atatgtgttttgagttccaaaagacattactttcttgtcatgtttgaatctgaaccgtagctttccgtttatgaattaattagtcgaagcctattttgtt |
27906908 |
T |
|
| Q |
106 |
gcttttacaatgattttgagatattaaaacactagtaatttctgttatattagttttcaaatttatattacatttccaactcatttctgcagcatgtact |
205 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27906907 |
gcttttacaatgattttgaggtatcaaaacactagcaagttctgttatattagttttcaaatttatattacatttccaactcatttctgcagcatgtgct |
27906808 |
T |
|
| Q |
206 |
tgtggctaatattactagcactttgaa |
232 |
Q |
| |
|
||||||||||| ||||||||||||||| |
|
|
| T |
27906807 |
tgtggctaata-tactagcactttgaa |
27906782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 7387550 - 7387786
Alignment:
| Q |
1 |
taaatatatgtgttttgagttccaaaaggcaatacttttttc-tcat-gtttgaatccaaaatgtcactatctgtttctgaattaattagtcaaagctta |
98 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||| |||| ||||||||| || || || || |||| |||||| ||||||| |||| || |
|
|
| T |
7387550 |
taaatatatgtgttttgagttccaaaacacattactttttttgtcatagtttgaatctgaaccgtagctttccgtttatgaattgattagtcgaagccta |
7387649 |
T |
|
| Q |
99 |
tcttgttgcttttacaatgattttgagatattaaaacactagtaatttctgttatattagttttcaaatttatattacatttccaactcatttctgcagc |
198 |
Q |
| |
|
| ||||||||||||||||||||||||| ||| || ||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7387650 |
ttttgttgcttttacaatgattttgaggtatcaatacactagcaagttctgctatattagttttcaaatttatattacatttccaactcatttctgcagc |
7387749 |
T |
|
| Q |
199 |
atgtacttgtggc---taatattactagcactttgaa |
232 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7387750 |
atgtacttgtggctaataatagtactagcactttgaa |
7387786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University