View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4279_low_22 (Length: 219)

Name: NF4279_low_22
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4279_low_22
NF4279_low_22
[»] chr2 (2 HSPs)
chr2 (98-203)||(32526605-32526710)
chr2 (54-95)||(32526730-32526771)
[»] chr3 (2 HSPs)
chr3 (154-195)||(26517852-26517893)
chr3 (98-139)||(17262875-17262916)
[»] chr1 (1 HSPs)
chr1 (160-195)||(30002876-30002911)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 32526710 - 32526605
Alignment:
Q  98 caaaaagttacaaagtctctggtgcacaattaagggagcaccgcccttttagcatgaaaaagaatgaaataattatacaaaaacacccatgcatgacagc 197  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  32526710 caaaaaattacaaagtctctggtgcacaattaagggagcaccgcccttttagcatgaaaaagaatgaaataattacacaaaaacactcatgcatgacagc 32526611  T
Q  198 gggttt 203  Q
    ||||||    
T  32526610 gggttt 32526605  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 32526771 - 32526730
Alignment:
Q  54 gaatatgatattagacgtgagtgagacaccgcatacaaggtg 95  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  32526771 gaatatgatattagacgggagtgagacaccgcgtacaaggtg 32526730  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 26517893 - 26517852
Alignment:
Q  154 aaaaagaatgaaataattatacaaaaacacccatgcatgaca 195  Q
    ||||| ||||||||||||| ||||||||||||||||||||||    
T  26517893 aaaaataatgaaataattacacaaaaacacccatgcatgaca 26517852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 17262916 - 17262875
Alignment:
Q  98 caaaaagttacaaagtctctggtgcacaattaagggagcacc 139  Q
    |||||||||||||||||| ||||||| ||| |||||||||||    
T  17262916 caaaaagttacaaagtctttggtgcaaaatcaagggagcacc 17262875  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 30002876 - 30002911
Alignment:
Q  160 aatgaaataattatacaaaaacacccatgcatgaca 195  Q
    |||||||||||||||||||||||| |||||||||||    
T  30002876 aatgaaataattatacaaaaacactcatgcatgaca 30002911  T

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