View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4279_low_23 (Length: 210)
Name: NF4279_low_23
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279_low_23 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 3681 - 3874
Alignment:
| Q |
1 |
aatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagattttgataggacagaagctgctacacctcctccacagccagaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3681 |
aatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagcttttgataggacagaagctgctacacctcctccacagccagaacc |
3780 |
T |
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| Q |
101 |
aacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagatagagattgatgaagagtt |
194 |
Q |
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| T |
3781 |
aacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagatagagattgttgaagagtt |
3874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 31319989 - 31319796
Alignment:
| Q |
1 |
aatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagattttgataggacagaagctgctacacctcctccacagccagaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31319989 |
aatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagcttttgataggacagaagctgctacacctcctccacagccagaacc |
31319890 |
T |
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| Q |
101 |
aacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagatagagattgatgaagagtt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31319889 |
aacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagatagagattgttgaagagtt |
31319796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 31332242 - 31332049
Alignment:
| Q |
1 |
aatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagattttgataggacagaagctgctacacctcctccacagccagaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31332242 |
aatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagcttttgataggacagaagctgctacacctcctccacagccagaacc |
31332143 |
T |
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| Q |
101 |
aacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagatagagattgatgaagagtt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31332142 |
aacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagatagagattgttgaagagtt |
31332049 |
T |
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