View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4279_low_6 (Length: 383)
Name: NF4279_low_6
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 9 - 367
Target Start/End: Complemental strand, 42799936 - 42799576
Alignment:
| Q |
9 |
aataatactagcactttgaaatgtggtttctgtcctatggtgtgataagcggtattcaaatgtattttccaaatcaccgtgataagttctgttataagtt |
108 |
Q |
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| T |
42799936 |
aatattactagcactttgaaatgtggtttctgtcctatggtgtgataagcggtattcaaatgtattttccaaatcaccatgataagttctgttataagtt |
42799837 |
T |
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| Q |
109 |
ttcaacgtgggtt--gatggcggtgtttaaggatgttgaagtagagatactgcatgttgattgaagtattccttcacgtaacaaataaatagaaatacaa |
206 |
Q |
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||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42799836 |
ttcaacgtgggttttgatggcagtgtttaaggatgttgaagtagagatactgcatgttgattgaagtattccttcacgtaacaaataaatagaaatacaa |
42799737 |
T |
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| Q |
207 |
taaacagaatattgacaagcatacttctctaccaatcttcatcagagttacatgctcaattttactataatttggtaaacattattgtgagagaaatatt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
42799736 |
taaacagaatattgacaagcatacttctctaccaatcttcatcagagttacatgctcaattttactataatttggtaaacattaatatgagagaaatatt |
42799637 |
T |
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| Q |
307 |
caagtcattgtataactttcttagttacgtacctcccaaggttagttttgaaactagcatt |
367 |
Q |
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| T |
42799636 |
caagtcattgtataactttcttagttacgtacctcccaaggttagttttgaaactagcatt |
42799576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 42803098 - 42803017
Alignment:
| Q |
21 |
actttgaaatgtggtttctgtcctatggtgtgataagcggtattcaaatgtattttccaaatcaccgtgataagttctgtta |
102 |
Q |
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| T |
42803098 |
actttgaaatgcggtttctgtcctatggtgtgataagtggtattcaaatgtattttcccaatcattatgataagttctgtta |
42803017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 25514405 - 25514500
Alignment:
| Q |
9 |
aataatactagcactttgaaatgtggtttctgtcctatggtgtgataa--gcggtattcaaatgtattttccaaatcaccgtgataagttctgtta |
102 |
Q |
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| T |
25514405 |
aatattactagcactttgaaatgtggtttctgtcgtatggtgtgataaattctgtattcaaatgtattttcccaatcattgtgataatctctgtta |
25514500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 25520970 - 25520875
Alignment:
| Q |
9 |
aataatactagcactttgaaatgtggtttctgtcctatggtgtgataag--cggtattcaaatgtattttccaaatcaccgtgataagttctgtta |
102 |
Q |
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|||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||| |
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| T |
25520970 |
aatattactagcactttgaaatgtgatttctgtcgtatggtgtgataagttatgtattcaaatgtattttcccaatcattgtgataatctctgtta |
25520875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 27906797 - 27906706
Alignment:
| Q |
13 |
atactagcactttgaaatgtggtttctgtcctatggtgtgataagcggtattcaaatgtattttccaaatcaccgtgataagttctgttata |
104 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| | ||||| |||||||||||||||||| |
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| T |
27906797 |
atactagcactttgaaatgtggtttctgtcctgtggtatgataagtggtattcaaatgtattttaccaatcattgtgataagttctgttata |
27906706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 7387767 - 7387854
Alignment:
| Q |
9 |
aataatactagcactttgaaatgtggtttctgtcctatggtgtgataagcggtattcaaatgtattttccaaatcaccgtgataagttctgttata |
104 |
Q |
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|||| |||||||||||||||||||||||||| || ||||| | |||||||||||||||||| | | ||| |||||||||||||||||| |
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| T |
7387767 |
aatagtactagcactttgaaatgtggtttct--------gtatgatatgtggtattcaaatgtattttaccagtcattgtgataagttctgttata |
7387854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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