View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4279_low_7 (Length: 372)

Name: NF4279_low_7
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4279_low_7
NF4279_low_7
[»] chr8 (6 HSPs)
chr8 (78-362)||(12587528-12587811)
chr8 (78-125)||(27324864-27324911)
chr8 (313-362)||(27324642-27324691)
chr8 (78-125)||(26647250-26647297)
chr8 (82-124)||(34054155-34054197)
chr8 (87-124)||(29283695-29283732)
[»] chr6 (1 HSPs)
chr6 (78-362)||(6900343-6900628)
[»] chr7 (3 HSPs)
chr7 (79-362)||(22969821-22970102)
chr7 (78-269)||(22962526-22962718)
chr7 (75-126)||(21312015-21312066)
[»] chr1 (1 HSPs)
chr1 (79-362)||(21880523-21880804)
[»] chr3 (2 HSPs)
chr3 (82-362)||(49603075-49603360)
chr3 (76-122)||(36840782-36840828)
[»] chr4 (2 HSPs)
chr4 (78-122)||(41451213-41451257)
chr4 (79-125)||(53232830-53232876)
[»] chr5 (2 HSPs)
chr5 (78-125)||(3293738-3293785)
chr5 (78-125)||(10711679-10711726)
[»] scaffold0197 (1 HSPs)
scaffold0197 (82-126)||(26288-26332)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 78 - 362
Target Start/End: Complemental strand, 12587811 - 12587528
Alignment:
Q  78 caggggcggagccactcacatgattgtgggggctcctgcctgcacaaacttctctannnnnnnnnatatatacatatacatatactgctaataacacccc 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | ||||||||||||||||||||||||||||||||    
T  12587811 caggggcggagccactcacatgattgtgggggctcctgcctgcacaaacttctctattttttttttt-tatacatatacatatactgctaataacacccc 12587713  T
Q  178 acccactactgctagcaatttctaaaatatcaaacaatcccacccagtagcccaactgcccaatcccaaggcccagccaacacaattatgatttatacca 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  12587712 acccactactgctagcaatttctaaaatatcaaacaatcccacccagtagcccaactgcccaatcccaaggcccagctaacacaattctgatttacacca 12587613  T
Q  278 acacaacacaggtcccaccatccacaatttacaatcacggtttctttctttctttctcatagtgaacaaacaaactccctctctg 362  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12587612 acacaacacaggtcccgccatccacaatttacaatcacggtttctttctttctttctcacagtgaacaaacaaactccctctctg 12587528  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 27324911 - 27324864
Alignment:
Q  78 caggggcggagccactcacatgattgtgggggctcctgcctgcacaaa 125  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||    
T  27324911 caggggcggagccactcacatgattgtgggggctcctacatgcacaaa 27324864  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 27324691 - 27324642
Alignment:
Q  313 cacggtttctttctttctttctcatagtgaacaaacaaactccctctctg 362  Q
    |||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  27324691 cacgttttctttctttctttctcacggtgaacaaacaaactccctctctg 27324642  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 26647250 - 26647297
Alignment:
Q  78 caggggcggagccactcacatgattgtgggggctcctgcctgcacaaa 125  Q
    ||||||||||||||| |||| | ||||| |||||||||||||||||||    
T  26647250 caggggcggagccacacacaaggttgtgtgggctcctgcctgcacaaa 26647297  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 34054155 - 34054197
Alignment:
Q  82 ggcggagccactcacatgattgtgggggctcctgcctgcacaa 124  Q
    |||||||||||||||| || ||||||||||||| |||||||||    
T  34054155 ggcggagccactcacaagagtgtgggggctcctacctgcacaa 34054197  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 29283732 - 29283695
Alignment:
Q  87 agccactcacatgattgtgggggctcctgcctgcacaa 124  Q
    ||||||||||| || |||||||||||||||||||||||    
T  29283732 agccactcacaagagtgtgggggctcctgcctgcacaa 29283695  T

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Target: chr6 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 78 - 362
Target Start/End: Original strand, 6900343 - 6900628
Alignment:
Q  78 caggggcggagccactcacatgattgtgggggctcctgcctgcacaaacttctctannnnnnnnnat-atatacatatacatatactgctaataacaccc 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||          | ||||||||||||||||||||||||||||||||    
T  6900343 caggggcggagccactcacatgattgtgggggctcctgcctgcacaaacttttctaatttttttttttatatacatatacatatactgctaataacaccc 6900442  T
Q  177 cacccactactgctagcaatttctaaaatatcaaacaatcccacccagtagcccaactgcccaatcccaaggcccagccaacacaattatgatttatacc 276  Q
    ||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||  ||||||||| ||||| | |||    
T  6900443 cacccactattgctagcaatttctaaaatatcaaacactcccactcagtagcccaactgcccaatcccaaggcccagttaacacaattctgattcacacc 6900542  T
Q  277 aacacaacacaggtcccaccatccacaatttacaatcacggtttctttctttctttctcatagtgaacaaacaaactccctctctg 362  Q
    ||||||||||| ||||| |||||||||||| ||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||    
T  6900543 aacacaacacacgtcccgccatccacaattcacaatcacgctttctttctttctttcttacagtgaacaaacaaacaccctctctg 6900628  T

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Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 79 - 362
Target Start/End: Original strand, 22969821 - 22970102
Alignment:
Q  79 aggggcggagccactcacatgattgtgggggctcctgcctgcacaaacttctctannnnnnnnnatatatacatatacatatactgctaataacacccca 178  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||| ||||          | | |  ||| ||||||||||||||||||||||||    
T  22969821 aggggcggagccactcacatgattaagggggctcctgcctgcacaaacttttctaaatt------tttttttataaacatatactgctaataacacccca 22969914  T
Q  179 cccactactgctagcaatttctaaaatatcaaacaatcccacccagtagcccaactgcccaatcccaaggcccagccaacacaattatgatttataccaa 278  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||    
T  22969915 cccactactgctagcaatttctaaaatatcaaacactcccacccagtagcccaactgcccaatcccaaggcccagctaacacaattctgatttacatcaa 22970014  T
Q  279 cacaacacaggtcccaccatccacaatttacaatcacgg----tttctttctttctttctcatagtgaacaaacaaactccctctctg 362  Q
    ||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||| |||||||||||||||||||||||||    
T  22970015 cacaacacacgtcccgccatccacaatttacaatcacggtttctttctttctttctttctcacagtgaacaaacaaactccctctctg 22970102  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 78 - 269
Target Start/End: Original strand, 22962526 - 22962718
Alignment:
Q  78 caggggcggagccactcacatgattgtgggggctcctgcctgcacaaacttctctannnnnnnnnat-atatacatatacatatactgctaataacaccc 176  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| || ||||          | |||||||||||  |||||||||||||||||||    
T  22962526 caggggcagagccactcacatgattgtgggggctcctgcctgcacaaatttttctaatttttttttttatatacatata--tatactgctaataacaccc 22962623  T
Q  177 cacccactactgct--agcaatttctaaaatatcaaacaatcccacccagtagcccaactgcccaatcccaaggcccagccaacacaattatgat 269  Q
    ||||||||| ||||  || |||||||||||||||||||| || |||||| |||||||||||||||||||||| ||||||| ||||||||| ||||    
T  22962624 cacccactattgctttagtaatttctaaaatatcaaacactctcacccaatagcccaactgcccaatcccaaagcccagctaacacaattctgat 22962718  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 21312066 - 21312015
Alignment:
Q  75 aatcaggggcggagccactcacatgattgtgggggctcctgcctgcacaaac 126  Q
    |||||| ||||||||||| |||| | ||||| ||||||||||||||||||||    
T  21312066 aatcagtggcggagccacacacaaggttgtgtgggctcctgcctgcacaaac 21312015  T

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Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 79 - 362
Target Start/End: Complemental strand, 21880804 - 21880523
Alignment:
Q  79 aggggcggagccactcacatgattgtgggggctcctgcctgcacaaacttctctannnnnnnnnatatatacatatacatatactgctaataacacccca 178  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||| ||||          | | |  ||| ||||||||||||||||||||||||    
T  21880804 aggggcggagccactcacatgattaagggggctcctgcctgcacaaacttttctaaatt------tttttttataaacatatactgctaataacacccca 21880711  T
Q  179 cccactactgctagcaatttctaaaatatcaaacaatcccacccagtagcccaactgcccaatcccaaggcccagccaacacaattatgatttataccaa 278  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||    
T  21880710 cccactactgctagcaatttctaaaatatcaaacactcccacccagtagcccaactgcccaatcccaaggcccagctaacacaattctgatttacatcaa 21880611  T
Q  279 cacaacacaggtcccaccatccacaatttacaatcacggtttctttctttct----ttctcatagtgaacaaacaaactccctctctg 362  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    |||||| |||||||||||||||||||||||||    
T  21880610 cacaacacacgtcccgccatccacaatttacaatcacggtttctttctttctttctttctcacagtgaacaaacaaactccctctctg 21880523  T

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Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 82 - 362
Target Start/End: Complemental strand, 49603360 - 49603075
Alignment:
Q  82 ggcggagccactcacatgattgtgggggctcctgcctgcacaaacttctctannnnnnnnnat-atatacatatacatatactgctaataacaccccacc 180  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||          | ||||||||||| ||||||||||||||||||||||||    
T  49603360 ggcggagccactcacatgattgcgggggctcctgcctgcacaaacttttctaatttttttttttatatacatatatatatactgctaataacaccccacc 49603261  T
Q  181 cactactgctagcaatttctaaaatatcaaacaatcccacccagtagcccaactgcccaatcccaaggcccagccaacacaattatgatttataccaaca 280  Q
     |||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| | ||||||||| ||||| | |||||||    
T  49603260 tactattgctaacaatttctaaaatatcaaacactcctacccagtagcctaactgcccaatcccaaggcccaactaacacaattctgattcacaccaaca 49603161  T
Q  281 caacacaggtcccaccatccacaatttacaatcacggtttctttctt----tctttctcatagtgaacaaacaaactccctctctg 362  Q
    ||||||| ||||| |||||||||||| ||||||||| ||||||||||    ||||||||| |||||||||||||||||||||||||    
T  49603160 caacacacgtcccgccatccacaattcacaatcacgctttctttctttctctctttctcacagtgaacaaacaaactccctctctg 49603075  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 36840828 - 36840782
Alignment:
Q  76 atcaggggcggagccactcacatgattgtgggggctcctgcctgcac 122  Q
    ||||| |||||| |||||||||| ||||||||||||| |||||||||    
T  36840828 atcagaggcggaaccactcacattattgtgggggctcgtgcctgcac 36840782  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 41451257 - 41451213
Alignment:
Q  78 caggggcggagccactcacatgattgtgggggctcctgcctgcac 122  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  41451257 caggggcggagccactcacatcagtgtgggggctcctgcctgcac 41451213  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 53232876 - 53232830
Alignment:
Q  79 aggggcggagccactcacatgattgtgggggctcctgcctgcacaaa 125  Q
    |||||||||||||| |||| | ||||| |||||||||||||||||||    
T  53232876 aggggcggagccacacacaagcttgtgtgggctcctgcctgcacaaa 53232830  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 3293738 - 3293785
Alignment:
Q  78 caggggcggagccactcacatgattgtgggggctcctgcctgcacaaa 125  Q
    ||||||||||||||| |||| | ||||| |||||||||||||||||||    
T  3293738 caggggcggagccacacacaaggttgtgtgggctcctgcctgcacaaa 3293785  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 10711726 - 10711679
Alignment:
Q  78 caggggcggagccactcacatgattgtgggggctcctgcctgcacaaa 125  Q
    ||||||||||||||| |||| | ||||| |||||||||||||||||||    
T  10711726 caggggcggagccacacacaaggttgtgtgggctcctgcctgcacaaa 10711679  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 26332 - 26288
Alignment:
Q  82 ggcggagccactcacatgattgtgggggctcctgcctgcacaaac 126  Q
    ||||||||||| |||| | ||||| ||||||||||||||||||||    
T  26332 ggcggagccacacacaaggttgtgtgggctcctgcctgcacaaac 26288  T

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