View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4279_low_9 (Length: 337)
Name: NF4279_low_9
Description: NF4279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4279_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 43332363 - 43332180
Alignment:
| Q |
6 |
ctatataatactaattgatattgtaaatgtatatcatgtgaagttattgtgtgtttctccgatcgtattgttagagttagtataattgaacctaaatctc |
105 |
Q |
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| T |
43332363 |
ctatataataataattgatattgtaaatgtatatcatgtgaagttattgtgtgtttctccgatcgtattgttcgagttagtataattgaacctaaatctc |
43332264 |
T |
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| Q |
106 |
aatcacttcttgcatgacatacatcagagttgaacgtgaataattgttaatttggtcagagcaaaagtattggatcaaaattac |
189 |
Q |
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| T |
43332263 |
aatcacttcttgcatgacatacatcagagttgaacgtgaataattgttaatttggtaaaagcaaaagtattggatcaaaattac |
43332180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 202 - 321
Target Start/End: Complemental strand, 43331743 - 43331621
Alignment:
| Q |
202 |
ttataagatacattcagtaattagta---cattcataattgtacccnnnnnnnntaagtacactcattacgagtataataggagtgtgtacacaatgatt |
298 |
Q |
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| T |
43331743 |
ttataagatacattcagtaattagtagtacattcataattgtacccaaaaaaaataagtacactcattacgagtataataggagtgtgtacacaatgatt |
43331644 |
T |
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| Q |
299 |
atatactaatgtgctctaataaa |
321 |
Q |
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| T |
43331643 |
atatagtaatgcgctctaataaa |
43331621 |
T |
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