View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4280-Insertion-12 (Length: 204)

Name: NF4280-Insertion-12
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4280-Insertion-12
NF4280-Insertion-12
[»] chr7 (3 HSPs)
chr7 (31-202)||(3929921-3930092)
chr7 (40-204)||(21317569-21317733)
chr7 (35-188)||(3928573-3928726)
[»] chr2 (5 HSPs)
chr2 (41-200)||(13576347-13576506)
chr2 (70-179)||(34562651-34562760)
chr2 (70-179)||(34571445-34571554)
chr2 (70-179)||(34578913-34579022)
chr2 (70-179)||(34584662-34584771)
[»] scaffold0197 (1 HSPs)
scaffold0197 (40-204)||(31006-31170)
[»] chr8 (8 HSPs)
chr8 (42-197)||(43479645-43479800)
chr8 (42-203)||(38799491-38799652)
chr8 (42-203)||(38821865-38822026)
chr8 (70-203)||(25865696-25865829)
chr8 (42-149)||(38807046-38807153)
chr8 (69-189)||(41943954-41944074)
chr8 (70-173)||(26592194-26592297)
chr8 (76-177)||(44343977-44344078)
[»] chr5 (8 HSPs)
chr5 (41-191)||(12531500-12531650)
chr5 (41-191)||(12546969-12547119)
chr5 (41-196)||(9866627-9866782)
chr5 (41-197)||(9894645-9894800)
chr5 (78-176)||(9870004-9870102)
chr5 (91-188)||(38735528-38735625)
chr5 (41-120)||(9903568-9903647)
chr5 (73-122)||(12538675-12538724)
[»] chr4 (4 HSPs)
chr4 (43-197)||(24860548-24860702)
chr4 (103-186)||(53290749-53290832)
chr4 (82-173)||(40036062-40036153)
chr4 (79-173)||(34748781-34748875)
[»] chr1 (2 HSPs)
chr1 (70-180)||(7594130-7594240)
chr1 (142-202)||(17769233-17769293)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 3929921 - 3930092
Alignment:
Q  31 aatcaaatcttctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcg 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||    
T  3929921 aatcaaatcttctaagccctttcgcctctgattcttcttgcaagttgaatatccttcggcataatagtaactctcttagcatgaatggcacaaagattcg 3930020  T
Q  131 tatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatc 202  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3930021 tatcttcaaacaaaccaacaagatacgcttcagcagcttcttgaagagcagaaacagcactactctgaaatc 3930092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 40 - 204
Target Start/End: Complemental strand, 21317733 - 21317569
Alignment:
Q  40 ttctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaa 139  Q
    |||||||||||||| || |  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||    
T  21317733 ttctaagccctttcaccacgaattcttcttgcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaa 21317634  T
Q  140 acaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctg 204  Q
    |||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||||    
T  21317633 acaaaccaacaagataagcttcagccgcttcttgaagagcagaaacagcactgctctggaatctg 21317569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 3928573 - 3928726
Alignment:
Q  35 aaatcttctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatc 134  Q
    ||||||||||||| || ||||  |||||||| | |||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  3928573 aaatcttctaagctctctcgcacctgattctgcatgcaagtttaatatccttaggcacaatagtaactctcttagcatgaatagcacaaagattcatatc 3928672  T
Q  135 ctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagc 188  Q
     |||||||||||||||| | ||||||||||   ||||||||| |||||||||||    
T  3928673 ttcaaacaaaccaacaatacacgcttcagcgatttcttgaagagcagaaacagc 3928726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 9e-69; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 13576506 - 13576347
Alignment:
Q  41 tctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaa 140  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  13576506 tctaagccctttcgcctctgattcttctcgcaagttgaatatccttaggcataatagtaaccctcttagcatgaatagcacaaagattcgtatcctcaaa 13576407  T
Q  141 caaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaa 200  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||    
T  13576406 caaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgaaa 13576347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 34562651 - 34562760
Alignment:
Q  70 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagctt 169  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| || ||||    
T  34562651 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgctt 34562750  T
Q  170 cttgaagtgc 179  Q
    | ||||||||    
T  34562751 cctgaagtgc 34562760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 34571445 - 34571554
Alignment:
Q  70 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagctt 169  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| || ||||    
T  34571445 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgctt 34571544  T
Q  170 cttgaagtgc 179  Q
    | ||||||||    
T  34571545 cctgaagtgc 34571554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 34578913 - 34579022
Alignment:
Q  70 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagctt 169  Q
    |||||||||||||||||   ||||| ||| |  |||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| |||||  | ||||    
T  34578913 gcaagttgaatatccttcaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgctt 34579012  T
Q  170 cttgaagtgc 179  Q
    | ||||||||    
T  34579013 cctgaagtgc 34579022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 34584662 - 34584771
Alignment:
Q  70 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagctt 169  Q
    |||||||||||||||||   ||||| ||| |  |||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| |||||  | ||||    
T  34584662 gcaagttgaatatccttcaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgctt 34584761  T
Q  170 cttgaagtgc 179  Q
    | ||||||||    
T  34584762 cctgaagtgc 34584771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 40 - 204
Target Start/End: Complemental strand, 31170 - 31006
Alignment:
Q  40 ttctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaa 139  Q
    |||||||||||||| || |  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||    
T  31170 ttctaagccctttcaccacgaattcttcttgcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaa 31071  T
Q  140 acaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctg 204  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||    
T  31070 acaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctctggaatctg 31006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 42 - 197
Target Start/End: Original strand, 43479645 - 43479800
Alignment:
Q  42 ctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaac 141  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||| ||||||    
T  43479645 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcgcaaaggttagtatcttcaaac 43479744  T
Q  142 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctg 197  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||    
T  43479745 aaaccaacaagataagcttcagcggcttcttgaagagcagaaacagcgctactctg 43479800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 38799652 - 38799491
Alignment:
Q  42 ctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaac 141  Q
    ||||||||| || |||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| |||||||| || || || |||||     
T  38799652 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaag 38799553  T
Q  142 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatct 203  Q
    | |||||| |  || |||||||||||||||||||| || ||||| || || ||||| |||||    
T  38799552 agaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctctggaatct 38799491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 38821865 - 38822026
Alignment:
Q  42 ctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaac 141  Q
    ||||||||| || |||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| |||||||| || || || |||||     
T  38821865 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaag 38821964  T
Q  142 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatct 203  Q
    | |||||| |  || |||||||||||||||||||| || ||||| || || ||||| |||||    
T  38821965 agaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctctggaatct 38822026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 25865829 - 25865696
Alignment:
Q  70 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagctt 169  Q
    ||||| ||||||||||| |||||||| || || |||||||||||||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||    
T  25865829 gcaagctgaatatcctttggcataatcgttaccctcttagcatgaattgcacacaaattagtatcctcaaacaatcccacaagataagcctcagcagctt 25865730  T
Q  170 cttgaagtgcagaaacagcactactctgaaatct 203  Q
    | |||||||||  |||||||  ||||||||||||    
T  25865729 cctgaagtgcaagaacagcatgactctgaaatct 25865696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 38807153 - 38807046
Alignment:
Q  42 ctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaac 141  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| || ||  |||| || ||||||||     
T  38807153 ctaagccctctcgcctctgattcttcttgcaagttgaatgtccttaggcatgatagtaactctcttagcatgaattgcgcacggatttgtgtcctcaaag 38807054  T
Q  142 aaaccaac 149  Q
    | ||||||    
T  38807053 agaccaac 38807046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 41944074 - 41943954
Alignment:
Q  69 tgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagct 168  Q
    |||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||| | ||| |||||||||||||| ||||| ||||| ||||| || |||    
T  41944074 tgcaagttgaatgtcctttggcataattgtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaatccaaccagataagcttctgctgct 41943975  T
Q  169 tcttgaagtgcagaaacagca 189  Q
    || |||||||||  |||||||    
T  41943974 tcctgaagtgcaagaacagca 41943954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 26592297 - 26592194
Alignment:
Q  70 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagctt 169  Q
    ||||| ||||||||||||||||| || ||||| | ||||||||||||||| || || || |||||||||||||| ||||||||||| || || || ||||    
T  26592297 gcaagctgaatatccttaggcatgatagtaacacgcttagcatgaatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgctt 26592198  T
Q  170 cttg 173  Q
    ||||    
T  26592197 cttg 26592194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 44344078 - 44343977
Alignment:
Q  76 tgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaa 175  Q
    ||||||||||| |||||||| || || |||||||||||||||||||| | ||| |||||||||||||| || || ||||| || ||||| ||||| ||||    
T  44344078 tgaatatccttgggcataatcgtcaccctcttagcatgaatagcacacaaattggtatcctcaaacaatcccacgagataagcctcagctgcttcctgaa 44343979  T
Q  176 gt 177  Q
    ||    
T  44343978 gt 44343977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 41 - 191
Target Start/End: Complemental strand, 12531650 - 12531500
Alignment:
Q  41 tctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaa 140  Q
    |||||||||| |||||||||||||| |  || |||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||| ||||| |||||    
T  12531650 tctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaa 12531551  T
Q  141 caaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcact 191  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  12531550 caaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcact 12531500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 41 - 191
Target Start/End: Original strand, 12546969 - 12547119
Alignment:
Q  41 tctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaa 140  Q
    ||||||| || |||||||| ||||| |  ||||||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||| ||||| |||||    
T  12546969 tctaagctctctcgcctctaattctgcgagcaagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaa 12547068  T
Q  141 caaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcact 191  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  12547069 caaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcact 12547119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 41 - 196
Target Start/End: Original strand, 9866627 - 9866782
Alignment:
Q  41 tctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaa 140  Q
    |||||||||| | |||||||||||||   || ||||| || |||| ||||||||| ||||||||||||||||||||||||||||| || ||||| |||||    
T  9866627 tctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaa 9866726  T
Q  141 caaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactct 196  Q
    |||||||||||||||  ||| ||||||||||||||| ||||||||| |||||||||    
T  9866727 caaaccaacaagatagtctttagcagcttcttgaagagcagaaacatcactactct 9866782  T

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Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 9894800 - 9894645
Alignment:
Q  41 tctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaa 140  Q
    |||||||||| |||||||||||||| |  ||||||| ||||||||| | |||||| ||||||| ||||||||||||||| |||| ||| ||||| |||||    
T  9894800 tctaagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactcacttagcatgaatagcgcaaatattagtatcttcaaa 9894702  T
Q  141 caaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctg 197  Q
    ||||| ||||| | | |||||| || |||||||||  ||||||||||||||||||||    
T  9894701 caaactaacaaaacaagcttcaacaacttcttgaacagcagaaacagcactactctg 9894645  T

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Target: chr5; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 9870102 - 9870004
Alignment:
Q  78 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaag 176  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||  |||| | |||||||||||||| ||| |||||| |||||||||||||    
T  9870102 aatatccttaggcataatagtaactctcttagcatgaatagcgcaaagattaatatcttaaaacaaaccaacaaaataagcttcaacagcttcttgaag 9870004  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 38735625 - 38735528
Alignment:
Q  91 ataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagc 188  Q
    ||||| ||||| |||||||||||||||| |||||| || ||||| ||||||||||||||||||||  |||||    ||| |||||| |||||||||||    
T  38735625 ataattgtaaccctcttagcatgaatagtacaaaggttagtatcttcaaacaaaccaacaagataaacttcaatgactttttgaagagcagaaacagc 38735528  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 9903647 - 9903568
Alignment:
Q  41 tctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagca 120  Q
    ||||| |||| ||||||  ||||||| | |||||||||||||||||||| ||||| ||||| || ||||||| |||||||    
T  9903647 tctaaaccctctcgcctgcgattcttttggcaagttgaatatccttaggtataatagtaacgcttttagcataaatagca 9903568  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 12538724 - 12538675
Alignment:
Q  73 agttgaatatccttaggcataatggtaactctcttagcatgaatagcaca 122  Q
    ||||||||| | |||||||| || ||||||||||||||||||||||||||    
T  12538724 agttgaatacctttaggcatgatagtaactctcttagcatgaatagcaca 12538675  T

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Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 197
Target Start/End: Complemental strand, 24860702 - 24860548
Alignment:
Q  43 taagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaaca 142  Q
    |||||||| |||||||||||||| |  || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |    
T  24860702 taagccctctcgcctctgattctgcgagcgagttgaatatccttgggcataatggtaactctcttagcatgaatagcgcaaagatttgtatcttcaaaga 24860603  T
Q  143 aaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctg 197  Q
      ||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  24860602 gtccaacgagataagcttcagcagcttcttgaagagcagaaacagcgctactctg 24860548  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 53290832 - 53290749
Alignment:
Q  103 ctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaaca 186  Q
    |||||||||||||| | |||||| || ||||| |||||||||||||||||||| |||||| |  ||| |||||| |||||||||    
T  53290832 ctcttagcatgaatggtacaaaggttagtatcttcaaacaaaccaacaagataagcttcaacgactttttgaagagcagaaaca 53290749  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 40036153 - 40036062
Alignment:
Q  82 tccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttg 173  Q
    ||||| |||||||| ||||||| ||| ||||| |||||||| |  || || |||||||| | |||||||||||| ||||||||||| |||||    
T  40036153 tccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttg 40036062  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 34748875 - 34748781
Alignment:
Q  79 atatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttg 173  Q
    |||||||||||||| || || || | ||| |||||||| ||||| || || ||||||||||| | |||||| ||||| || ||||| ||||||||    
T  34748875 atatccttaggcatgatagtgacacgcttggcatgaatggcacagaggttagtatcctcaaagagaccaacgagataagcctcagccgcttcttg 34748781  T

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Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 7594130 - 7594240
Alignment:
Q  70 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagctt 169  Q
    ||||| ||||||||||| |||||||| || || |||||||||||||| ||||| ||||| || ||||||||||| ||||| || || || ||||| ||||    
T  7594130 gcaagctgaatatcctttggcataattgtcaccctcttagcatgaattgcacacagattggtgtcctcaaacaatccaaccaggtaagcctcagctgctt 7594229  T
Q  170 cttgaagtgca 180  Q
    | |||||||||    
T  7594230 cctgaagtgca 7594240  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 17769233 - 17769293
Alignment:
Q  142 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatc 202  Q
    |||||||||||||| ||| ||   ||||||||||| |||||||||| |||||||| |||||    
T  17769233 aaaccaacaagataagctacactggcttcttgaagagcagaaacagtactactctaaaatc 17769293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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