View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280-Insertion-14 (Length: 204)
Name: NF4280-Insertion-14
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280-Insertion-14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 12662813 - 12662610
Alignment:
| Q |
1 |
atatttgctcttagcagcaaccaaattgctgttgtcaagtattctcttttaggttccatcctttcaaaccttcttcttgtgcttggaacctctctacttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12662813 |
atatttgctcttagcagcaaccaaattgctgttgtcaagtattctcttttaggttccatcctttcaaaccaccttcttgtgcttggaacctctctacttt |
12662714 |
T |
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| Q |
101 |
gtggtggcattgcaaaccttggagtggagcaaaaatatgacagagtaagtccctaaaatccaattaacacttccattttaaatcgaggtatttaactaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12662713 |
gtggtggcattgcaaaccttggagtggagcaaaaatatgacagagtaagtccctaaaatccaattaacacttccattttaaatcgaggtatttaactaag |
12662614 |
T |
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| Q |
201 |
tggt |
204 |
Q |
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|||| |
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| T |
12662613 |
tggt |
12662610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 25015104 - 25014906
Alignment:
| Q |
1 |
atatttgctcttagcagcaaccaaattgctgttgtcaagtattctcttttaggttccatcctttcaaaccttcttcttgtgcttggaacctctctacttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25015104 |
atatttgctcttagcagcaaccaaattgctgttgtcaagtattctcttttaggttccatcctttcaaaccttcttcttgtgcttggaacctctctacttt |
25015005 |
T |
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| Q |
101 |
gtggtggcattgcaaaccttggagtggagcaaaaatatgacagagtaagtccctaaaatccaattaacacttcc---attttaaatcgaggtatttaac |
196 |
Q |
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| T |
25015004 |
gtggtggcattgctaaccttggagttgagcaaaaatatgacagagtaagtctctaatatccgattaacacttccgtagttttatatcgaggtatttaac |
25014906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 28 - 193
Target Start/End: Complemental strand, 22979542 - 22979377
Alignment:
| Q |
28 |
gctgttgtcaagtattctcttttaggttccatcctttcaaaccttcttcttgtgcttggaacctctctactttgtggtggcattgcaaaccttggagtgg |
127 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
22979542 |
gctgttgtcaagtattctcttataggttccatcctttcaaaccttcttcttgtgcttgaaacctctctactttgtggtgacattgcaaaccttggagtgg |
22979443 |
T |
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| Q |
128 |
agcaaaaatatgacagagtaagtccctaaaatccaattaacacttccattttaaatcgaggtattt |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
22979442 |
agcaaaaatatgacagagtaagtccctaaaatccaattaacacttccattttaaattgaagtattt |
22979377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 23808862 - 23809027
Alignment:
| Q |
28 |
gctgttgtcaagtattctcttttaggttccatcctttcaaaccttcttcttgtgcttggaacctctctactttgtggtggcattgcaaaccttggagtgg |
127 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
23808862 |
gctgttgtcaagtattctcttataggttccatcctttcaaaccttcttcttgtgcttgaaacctctctactttgtggtgacattgcaaaccttggagtgg |
23808961 |
T |
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| Q |
128 |
agcaaaaatatgacagagtaagtccctaaaatccaattaacacttccattttaaatcgaggtattt |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
23808962 |
agcaaaaatatgacagagtaagtccctaaaatccaattaacacttccattttaaattgaagtattt |
23809027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 28 - 163
Target Start/End: Complemental strand, 2629621 - 2629486
Alignment:
| Q |
28 |
gctgttgtcaagtattctcttttaggttccatcctttcaaaccttcttcttgtgcttggaacctctctactttgtggtggcattgcaaaccttggagtgg |
127 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
2629621 |
gctgttgtcaagtattctcttataggttccatcctttcaaaccttcttcttgtgcttgaaacctctctactttgtggtgacattgcaaaccttggagtgg |
2629522 |
T |
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| Q |
128 |
agcaaaaatatgacagagtaagtccctaaaatccaa |
163 |
Q |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
2629521 |
agcaaaaatatgacagagtaagtcccaaaaatccaa |
2629486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 5129684 - 5129837
Alignment:
| Q |
1 |
atatttgctcttagcagcaaccaaattgctgttgtcaagtattctcttttaggttccatcctttcaaaccttcttcttgtgcttggaacctctctacttt |
100 |
Q |
| |
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|||||||| ||||||| ||| |||||| ||| |||||||||||||| | |||||||| || || |||||||||||||| ||||||||||||||| | | |
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| T |
5129684 |
atatttgcacttagcaataacaaaattgatgtggtcaagtattctctccttggttccatactctccaaccttcttcttgttcttggaacctctctattat |
5129783 |
T |
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| Q |
101 |
gtggtggcattgcaaaccttggagtggagcaaaaatatgacagagtaagtccct |
154 |
Q |
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||||||||||||||||||| ||| || ||||||||||||||||||| ||||| |
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| T |
5129784 |
gtggtggcattgcaaacctaagagcagaacaaaaatatgacagagtaattccct |
5129837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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