View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4280-Insertion-22 (Length: 199)
Name: NF4280-Insertion-22
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280-Insertion-22 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 19643095 - 19643288
Alignment:
| Q |
6 |
aaggccaagtgaaccttccctttcccatagtttttcctttgaaccattctccaacatatatacatccatctgtccataagtacttccctttcccatgtgg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19643095 |
aaggccaagtgaaccttccctttcccatagtttttcctttgaaccattctccaacatatatacatccatctgtccataagtacttccctttcccatgtgg |
19643194 |
T |
|
| Q |
106 |
gaagttatcagcccattctcctttgtagtaatctccattaggtagaaccctctctgcatggtatacttctgtttcatccttgctttcttcttca |
199 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19643195 |
gaagttatcagcccattctcctttatagtaatctccattgggtagaaccctctctgcatggtatacttctgtttcatccttgctttcttcttca |
19643288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 35256641 - 35256503
Alignment:
| Q |
6 |
aaggccaagtgaaccttccctttcccatagtttttcctttgaaccattctccaacatatatacatccatctgtccataagtacttccctttcccatgtgg |
105 |
Q |
| |
|
|||||||| |||| || || |||||| | ||||||||||||||||||| |||||| || || || ||||| ||||||| || || |||| |||||||| |
|
|
| T |
35256641 |
aaggccaactgaatctaccttttccctttgtttttcctttgaaccattgtccaacgtacatgcacccatccgtccatagatattttccttctccatgtgg |
35256542 |
T |
|
| Q |
106 |
gaagttatcagcccattctcctttgtagtaatctccatt |
144 |
Q |
| |
|
|| || || ||||||| |||| | |||||||| ||||| |
|
|
| T |
35256541 |
aaaattttctgcccattgtcctgtatagtaatcaccatt |
35256503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University