View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280-Insertion-39 (Length: 187)
Name: NF4280-Insertion-39
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280-Insertion-39 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 46951371 - 46951196
Alignment:
| Q |
12 |
ataactaggtatgaaccacccaagctgagagagagattattccattttacagcagagtctattgcaaagttgaaagctaaggccaatatggagtctaata |
111 |
Q |
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| T |
46951371 |
ataactaggtatgaaccacccaagctgagagagagattcttccattttacagcagagtctattgcaaagttgaaagctaaggccaatatggagtctaata |
46951272 |
T |
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| Q |
112 |
caaacaaaatctcttcattccaatctttatcagcacatgtttggagaggtataactcgtgctcgcgacctaacgaa |
187 |
Q |
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| T |
46951271 |
caaacaaaatctcttcattccaatctttatcagcacatgtttggagaggtataactcgtgctcgcgacctaacgaa |
46951196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 46958525 - 46958406
Alignment:
| Q |
39 |
agagagagattattccattttacagcagagtctattgcaaagttgaaagctaaggccaatatggagtctaatacaaacaaaatctcttcattccaatctt |
138 |
Q |
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| T |
46958525 |
agagatagattcttccattttacaccggagtctattgtaaaactgaaagcaaaggcgaataaggagtttaacacaacaaaaatatcttcgttccaggctt |
46958426 |
T |
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| Q |
139 |
tatcagcacatgtttggaga |
158 |
Q |
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| T |
46958425 |
tatcagcacatgtttggaga |
46958406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 46997848 - 46997727
Alignment:
| Q |
37 |
tgagagagagattattccattttacagcagagtctattgcaaagttgaaagctaaggccaatatggagtctaatacaaacaaaatctcttcattccaatc |
136 |
Q |
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| T |
46997848 |
tgagagagagaatatttcatttttcagcagagtctattgcgaaacttaaagcaaaagctaacaaagagtctgatacaaacaaaatctcttcttttcaatc |
46997749 |
T |
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| Q |
137 |
tttatcagcacatgtttggaga |
158 |
Q |
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| T |
46997748 |
cttatcagcactagtttggaga |
46997727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 47001512 - 47001376
Alignment:
| Q |
37 |
tgagagagagattattccattttacagcagagtctattgc-aaagttgaaagctaaggccaatatggagtctaatacaaacaaaatctcttcattccaat |
135 |
Q |
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| T |
47001512 |
tgagagagaggatattccatttttcagcagagtctatagcgaaacttaaaggcaaaagctaacaaagagtttgatacaaacaaaatctcttcgtttcaat |
47001413 |
T |
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| Q |
136 |
ctttatcagcacatgtttggagaggtataactcgtgc |
172 |
Q |
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| T |
47001412 |
ctttatcagcactagtttggagatctataactcgtgc |
47001376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 46955648 - 46955553
Alignment:
| Q |
63 |
gcagagtctattgcaaagttgaaagctaaggccaatatggagtctaatacaaacaaaatctcttcattccaatctttatcagcacatgtttggaga |
158 |
Q |
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| T |
46955648 |
gcagagtctattgcaaaactgaaagcaaaggccaataaagaatccaatacaaatgaaatatcttccttccaatctttatcggcatttgtttggaga |
46955553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 46980772 - 46980643
Alignment:
| Q |
39 |
agagagagattattccattttacagcagagtctattgcaaagttgaaagctaaggccaatatggagtctaatacaaacaaaatctcttcattccaatctt |
138 |
Q |
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| T |
46980772 |
agagagagaatcttccatttttcagtggaatctatagcaaaacttaaagcaaaggcaaatgcagagtctaatacaaacaaaatttcttcgtttcaatctt |
46980673 |
T |
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| Q |
139 |
tatcagcacatgtttggagaggtataactc |
168 |
Q |
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| T |
46980672 |
tatcagcattagtttggagatctataactc |
46980643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 46974783 - 46974650
Alignment:
| Q |
39 |
agagagagattattccattttacagcagagtctattgcaaagttgaaagctaaggccaatatggagtctaatacaaacaaaatctcttcattccaatctt |
138 |
Q |
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| T |
46974783 |
agagagagaatcttccatttttcagctgagtctataatgaaactgaaagcaaaggcaaatgaagagtctaatacaagaaaaatttcttcgtttcaatctt |
46974684 |
T |
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| Q |
139 |
tatcagcacatgtttggagaggtataactcgtgc |
172 |
Q |
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| T |
46974683 |
tatcagcattagtttggagatctataactcgtgc |
46974650 |
T |
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