View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280-Insertion-40 (Length: 147)
Name: NF4280-Insertion-40
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280-Insertion-40 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 1e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 44499414 - 44499268
Alignment:
| Q |
1 |
atctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcgaatctgagcagttacggaggagaacagagcaaaaccaacgccggaaggaga |
100 |
Q |
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| T |
44499414 |
atctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcgaatctgagcagttacggaggagaacagagcaaaaccaacgccgaaaggaga |
44499315 |
T |
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| Q |
101 |
agcaaggtcacctgtgcgaatctgtccatcaattttctcttcaaaac |
147 |
Q |
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| T |
44499314 |
agaaaggtcatctgtgcgaatctgtccatcaattttctcttcaaaac |
44499268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 24191791 - 24191937
Alignment:
| Q |
1 |
atctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcgaatctgagcagttacggaggagaacagagcaaaaccaacgccggaaggaga |
100 |
Q |
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| T |
24191791 |
atctggagaatcgaccgaaattggagaacaatcggaggagagaggtgcgaatctaagcagttacggaggagaatggagcaaaaccaacgccggaaggaga |
24191890 |
T |
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| Q |
101 |
agcaaggtcacctgtgcgaatctgtccatcaattttctcttcaaaac |
147 |
Q |
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| T |
24191891 |
agaaaggtctcctgtgcgaatctgtccatcaattttctcttcaaaac |
24191937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 4e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 4e-61
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 44376160 - 44376018
Alignment:
| Q |
5 |
ggagaatcgaacgaaattggagaacaatcggaggagagaggtgcgaatctgagcagttacggaggagaacagagcaaaaccaacgccggaaggagaagca |
104 |
Q |
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| T |
44376160 |
ggagaatcgaccgaaattggagaacagtcggaggagagaggtgcgaatctgagcagttacggaggagaacggagcaaaaccaacgccggaaggagaagaa |
44376061 |
T |
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| Q |
105 |
aggtcacctgtgcgaatctgtccatcaattttctcttcaaaac |
147 |
Q |
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| T |
44376060 |
aggtcacctgtgcgaatatgtcgatcaattttctcttcaaaac |
44376018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 4e-61
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 44385027 - 44384885
Alignment:
| Q |
5 |
ggagaatcgaacgaaattggagaacaatcggaggagagaggtgcgaatctgagcagttacggaggagaacagagcaaaaccaacgccggaaggagaagca |
104 |
Q |
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| T |
44385027 |
ggagaatcgaccgaaattggagaacagtcggaggagagaggtgcgaatctgagcagttacggaggagaacggagcaaaaccaacgccggaaggagaagaa |
44384928 |
T |
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| Q |
105 |
aggtcacctgtgcgaatctgtccatcaattttctcttcaaaac |
147 |
Q |
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| T |
44384927 |
aggtcacctgtgcgaatatgtcgatcaattttctcttcaaaac |
44384885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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