View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280-Insertion-46 (Length: 146)
Name: NF4280-Insertion-46
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280-Insertion-46 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 12813421 - 12813566
Alignment:
| Q |
1 |
attatctctttctttgnaacccataaatcatctctatcattgtttgaattgnnnnnnngaaagaggaagagtaagattggtgattagtttcgtttgaggg |
100 |
Q |
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| T |
12813421 |
attatctctttctttgaaacccataaatcatctctatcactgtttgaattgaaacaaagaaagaggaagagtaagattggtgattagtttcgtttgaggg |
12813520 |
T |
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| Q |
101 |
tttgacagatgattgcaaaagtggttttctaacaccagtaagagaa |
146 |
Q |
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| T |
12813521 |
tttgacagatgattgcaaaagtggttttctaacaccagtaagagaa |
12813566 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 48292701 - 48292638
Alignment:
| Q |
67 |
aagagtaagattggtgattagtttcgtttgagggtttgacagatgattgcaaaagtggttttct |
130 |
Q |
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| T |
48292701 |
aagagtgagaatggtgattagttacgtttgagggtttgacagatgagagcaaaagtggctttct |
48292638 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22418261 - 22418305
Alignment:
| Q |
1 |
attatctctttctttgnaacccataaatcatctctatcattgttt |
45 |
Q |
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| T |
22418261 |
attatctctttctttgaaacccatatatcatctctatcattgttt |
22418305 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14998399 - 14998449
Alignment:
| Q |
1 |
attatctctttctttgnaacccataaatcatctctatcattgtttgaattg |
51 |
Q |
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||||||||||||||| |||||| ||||||||| ||||| ||||||||||| |
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| T |
14998399 |
attatctctttctttcaaacccagaaatcatctttatcactgtttgaattg |
14998449 |
T |
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