View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280-Insertion-49 (Length: 186)
Name: NF4280-Insertion-49
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280-Insertion-49 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 40061652 - 40061467
Alignment:
| Q |
1 |
ataattgcgttatcgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagtactacattcttgcaatctggtaagatgctaacagac |
100 |
Q |
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| T |
40061652 |
ataattgcgttattgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagcactacattcttgcaatctggtaagatgctaacagac |
40061553 |
T |
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| Q |
101 |
catgcaggcaagtgatatgaattgccactgaaatttacagttttatcacttttagtgtccacgttggcgagaaaggcagcacatac |
186 |
Q |
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| T |
40061552 |
catgcaggcaagtgatatgaattgccactgaaatttacagttttatcacttttagtgtccacgttggcgagaaaggcagcacatac |
40061467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 6e-82
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 40079790 - 40079613
Alignment:
| Q |
9 |
gttatcgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagtactacattcttgcaatctggtaagatgctaacagaccatgcagg |
108 |
Q |
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| T |
40079790 |
gttattgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagcactacattcttgcaatctggtaagatgctcacagaccatgcagg |
40079691 |
T |
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| Q |
109 |
caagtgatatgaattgccactgaaatttacagttttatcacttttagtgtccacgttggcgagaaaggcagcacatac |
186 |
Q |
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| T |
40079690 |
caagtgatatgaattgccactgaaatttacggttttatcatttttagtatccacgttggcgagaaaggcagcacatac |
40079613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 9e-75
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 40087501 - 40087316
Alignment:
| Q |
1 |
ataattgcgttatcgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagtactacattcttgcaatctggtaagatgctaacagac |
100 |
Q |
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| T |
40087501 |
ataattgtgttattgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagcactacattcttgcaatctggcaagatgctcacagac |
40087402 |
T |
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| Q |
101 |
catgcaggcaagtgatatgaattgccactgaaatttacagttttatcacttttagtgtccacgttggcgagaaaggcagcacatac |
186 |
Q |
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| T |
40087401 |
catgcaggcaagtgatatgaattgccactgaaatttacggttttatcagatttggcgtccacattggcgagaaaggcagcacatac |
40087316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 22013913 - 22013994
Alignment:
| Q |
42 |
gacaaacctttgcagtattaagtactacattcttgcaatctggtaagatgctaacagaccatgcaggcaagtgatatgaatt |
123 |
Q |
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| T |
22013913 |
gacaaacctttgcagtattgagtacaacatttttgcagtccggtaagatgctcacagaccatccaggcaagtgatatgaatt |
22013994 |
T |
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