View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4280-Insertion-5 (Length: 136)

Name: NF4280-Insertion-5
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4280-Insertion-5
NF4280-Insertion-5
[»] chr4 (16 HSPs)
chr4 (6-136)||(17970408-17970535)
chr4 (96-136)||(27563337-27563377)
chr4 (96-136)||(27412773-27412813)
chr4 (96-136)||(27504031-27504071)
chr4 (96-136)||(27600662-27600702)
chr4 (96-129)||(27415737-27415770)
chr4 (98-135)||(27444787-27444824)
chr4 (96-136)||(27420517-27420557)
chr4 (96-136)||(27468318-27468358)
chr4 (96-136)||(27515000-27515040)
chr4 (96-136)||(27524633-27524673)
chr4 (96-136)||(27559231-27559271)
chr4 (96-136)||(27567364-27567404)
chr4 (96-136)||(27585797-27585837)
chr4 (97-136)||(27495645-27495684)
chr4 (97-136)||(27570041-27570080)
[»] chr2 (1 HSPs)
chr2 (6-136)||(3073678-3073805)
[»] chr3 (12 HSPs)
chr3 (15-136)||(50904702-50904823)
chr3 (15-136)||(38044012-38044133)
chr3 (96-136)||(48840703-48840743)
chr3 (96-136)||(50910069-50910109)
chr3 (96-136)||(55084895-55084935)
chr3 (57-135)||(38028718-38028796)
chr3 (57-135)||(38040033-38040111)
chr3 (57-135)||(38036745-38036823)
chr3 (98-132)||(38024868-38024902)
chr3 (98-132)||(38031320-38031354)
chr3 (99-132)||(50911863-50911896)
chr3 (103-130)||(48838694-48838721)
[»] chr8 (2 HSPs)
chr8 (57-135)||(21604706-21604784)
chr8 (97-132)||(21607288-21607323)
[»] chr5 (2 HSPs)
chr5 (14-63)||(33492864-33492913)
chr5 (96-136)||(1754797-1754837)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 6e-38; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 17970535 - 17970408
Alignment:
Q  6 tattattataaatgtcactactaatcaatgtaagtctcttgcagctgcaggtttatagaccattgaagttagaagtaacatgcnnnnnnncatcttctgt 105  Q
    |||| |||||||||||||||| ||   |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||       ||||||||||    
T  17970535 tattgttataaatgtcactaccaa---atgtaagtctctcgcagctgcaggtttatagaccattgaagctagaagtaacatgcaaaaaaacatcttctgt 17970439  T
Q  106 gcaaggaattgtgaggccacccattggatga 136  Q
    |||||||||||||||||||||||||||||||    
T  17970438 gcaaggaattgtgaggccacccattggatga 17970408  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 27563337 - 27563377
Alignment:
Q  96 catcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  27563337 catcttcagtgcaaggaattgtgaggccacccattggatga 27563377  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 27412813 - 27412773
Alignment:
Q  96 catcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  27412813 catcttccgtgcaaggaatggtgaggccacccattggatga 27412773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 27504071 - 27504031
Alignment:
Q  96 catcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  27504071 catcttcggtgcaaggaatggtgaggccacccattggatga 27504031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 27600702 - 27600662
Alignment:
Q  96 catcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    |||||||| |||||||||||||||| |||||||||||||||    
T  27600702 catcttctttgcaaggaattgtgagaccacccattggatga 27600662  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 27415770 - 27415737
Alignment:
Q  96 catcttctgtgcaaggaattgtgaggccacccat 129  Q
    ||||||||||||||||||| ||||||||||||||    
T  27415770 catcttctgtgcaaggaatggtgaggccacccat 27415737  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 27444787 - 27444824
Alignment:
Q  98 tcttctgtgcaaggaattgtgaggccacccattggatg 135  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  27444787 tcttctctgcaaggaattgtgagaccacccattggatg 27444824  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 27420557 - 27420517
Alignment:
Q  96 catcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    ||||||| ||||||||||| |||||||||||||| ||||||    
T  27420557 catcttccgtgcaaggaatggtgaggccacccatgggatga 27420517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 27468318 - 27468358
Alignment:
Q  96 catcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    ||||||| ||||||||||| |||||||||||||| ||||||    
T  27468318 catcttccgtgcaaggaatggtgaggccacccatgggatga 27468358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 27515040 - 27515000
Alignment:
Q  96 catcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    |||||||||| |||||||| |||||||||||||| ||||||    
T  27515040 catcttctgtacaaggaatggtgaggccacccatgggatga 27515000  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 27524673 - 27524633
Alignment:
Q  96 catcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    ||||||| ||||| ||||| |||||||||||||||||||||    
T  27524673 catcttcggtgcacggaatggtgaggccacccattggatga 27524633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 27559231 - 27559271
Alignment:
Q  96 catcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    |||||||  |||||||||||||||| |||||||||||||||    
T  27559231 catcttcactgcaaggaattgtgagaccacccattggatga 27559271  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 27567404 - 27567364
Alignment:
Q  96 catcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    |||||||  |||||||||||||||| |||||||||||||||    
T  27567404 catcttcgctgcaaggaattgtgagaccacccattggatga 27567364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 27585837 - 27585797
Alignment:
Q  96 catcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    ||||||||||||||||||| ||||| || ||||||||||||    
T  27585837 catcttctgtgcaaggaatggtgagacctcccattggatga 27585797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 27495684 - 27495645
Alignment:
Q  97 atcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    ||||||| |||||||||| ||||| |||||||||||||||    
T  27495684 atcttctctgcaaggaatggtgagaccacccattggatga 27495645  T

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Target: chr4; HSP #16
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 27570041 - 27570080
Alignment:
Q  97 atcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    |||||| ||||||||||| |||||||||||||| ||||||    
T  27570041 atcttcggtgcaaggaatggtgaggccacccatgggatga 27570080  T

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Target: chr2 (Bit Score: 80; Significance: 6e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 3073805 - 3073678
Alignment:
Q  6 tattattataaatgtcactactaatcaatgtaagtctcttgcagctgcaggtttatagaccattgaagttagaagtaacatgcnnnnnnncatcttctgt 105  Q
    |||| |||||||||||||||| ||   |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||       ||||||||||    
T  3073805 tattgttataaatgtcactaccaa---atgtaagtctctcgcagctgcaggtttatagaccattgaagctagaagtaacatgcaaaaaaacatcttctgt 3073709  T
Q  106 gcaaggaattgtgaggccacccattggatga 136  Q
    |||||||||||||||||||||||||||||||    
T  3073708 gcaaggaattgtgaggccacccattggatga 3073678  T

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Target: chr3 (Bit Score: 49; Significance: 2e-19; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 50904702 - 50904823
Alignment:
Q  15 aaatgtcactactaatcaatgtaagtctcttgcagctgcaggtttatagaccattgaagttagaagtaacatgcnnnnnnncatcttctgtgcaaggaat 114  Q
    ||||||||||||||||| |||| | |||||||||||||||| |||| || |||||||||  |||||| | ||||       | |||||| ||||||||||    
T  50904702 aaatgtcactactaatctatgtcactctcttgcagctgcagatttacagcccattgaagcgagaagtgatatgcaaaaaaacctcttctctgcaaggaat 50904801  T
Q  115 tgtgaggccacccattggatga 136  Q
     |||||||||||||||||||||    
T  50904802 ggtgaggccacccattggatga 50904823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 38044133 - 38044012
Alignment:
Q  15 aaatgtcactactaatcaatgtaagtctcttgcagctgcaggtttatagaccattgaagttagaagtaacatgcnnnnnnncatcttctgtgcaaggaat 114  Q
    ||||||||| ||||||| |||| ||||| |||||||||||| | ||||  |||||||||  |||||||||| ||       || |||| |||||||||||    
T  38044133 aaatgtcacgactaatctatgtcagtcttttgcagctgcagctctatatcccattgaagcgagaagtaacacgcaagaaaacaccttcggtgcaaggaat 38044034  T
Q  115 tgtgaggccacccattggatga 136  Q
    ||||||||| ||||||||||||    
T  38044033 tgtgaggccgcccattggatga 38044012  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 48840703 - 48840743
Alignment:
Q  96 catcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48840703 catcttctgtgcaaggaattgtgaggccacccattggatga 48840743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 50910109 - 50910069
Alignment:
Q  96 catcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  50910109 catcttctgtgcaaggaattgtgaggccacccattggatga 50910069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 55084935 - 55084895
Alignment:
Q  96 catcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  55084935 catcttctgtgcaaggaattgtgaggccacccattggatga 55084895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 38028718 - 38028796
Alignment:
Q  57 tttatagaccattgaagttagaagtaacatgcnnnnnnncatcttctgtgcaaggaattgtgaggccacccattggatg 135  Q
    ||||||| |||||||||| |||||||| ||||       | |||||||||||||||||||||||||| |||||||||||    
T  38028718 tttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatg 38028796  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 38040033 - 38040111
Alignment:
Q  57 tttatagaccattgaagttagaagtaacatgcnnnnnnncatcttctgtgcaaggaattgtgaggccacccattggatg 135  Q
    ||||||| |||||||||| |||||||| ||||       | |||||||||||||||||||||||||| |||||||||||    
T  38040033 tttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatg 38040111  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 38036745 - 38036823
Alignment:
Q  57 tttatagaccattgaagttagaagtaacatgcnnnnnnncatcttctgtgcaaggaattgtgaggccacccattggatg 135  Q
    ||||||| |||||||||| |||||||| ||||       | | |||||||||||||||||||||||| |||||||||||    
T  38036745 tttatagcccattgaagtgagaagtaatatgcaagaaaacgtattctgtgcaaggaattgtgaggccgcccattggatg 38036823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 38024868 - 38024902
Alignment:
Q  98 tcttctgtgcaaggaattgtgaggccacccattgg 132  Q
    ||||||||||||||||| |||||||||||||||||    
T  38024868 tcttctgtgcaaggaatcgtgaggccacccattgg 38024902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 38031320 - 38031354
Alignment:
Q  98 tcttctgtgcaaggaattgtgaggccacccattgg 132  Q
    ||||||||||||||||| |||||||||||||||||    
T  38031320 tcttctgtgcaaggaatcgtgaggccacccattgg 38031354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 50911863 - 50911896
Alignment:
Q  99 cttctgtgcaaggaattgtgaggccacccattgg 132  Q
    ||||||||||||||||||| ||||||||||||||    
T  50911863 cttctgtgcaaggaattgttaggccacccattgg 50911896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 130
Target Start/End: Original strand, 48838694 - 48838721
Alignment:
Q  103 tgtgcaaggaattgtgaggccacccatt 130  Q
    ||||||||||||||||||||||||||||    
T  48838694 tgtgcaaggaattgtgaggccacccatt 48838721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 21604706 - 21604784
Alignment:
Q  57 tttatagaccattgaagttagaagtaacatgcnnnnnnncatcttctgtgcaaggaattgtgaggccacccattggatg 135  Q
    ||||||| |||||||||| |||||||| ||||       | |||||||||||||||||||||||||| |||||||||||    
T  21604706 tttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatg 21604784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 21607288 - 21607323
Alignment:
Q  97 atcttctgtgcaaggaattgtgaggccacccattgg 132  Q
    |||||||||||||||||  |||||||||||||||||    
T  21607288 atcttctgtgcaaggaaccgtgaggccacccattgg 21607323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 33492913 - 33492864
Alignment:
Q  14 taaatgtcactactaatcaatgtaagtctcttgcagctgcaggtttatag 63  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||||||||    
T  33492913 taaacgtcactactaatctatgcaagtctcttgcagctgcaggtttatag 33492864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 1754837 - 1754797
Alignment:
Q  96 catcttctgtgcaaggaattgtgaggccacccattggatga 136  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  1754837 catcttctgtgcaaagaatggtgaggccacccattggatga 1754797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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