View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4280-Insertion-52 (Length: 217)
Name: NF4280-Insertion-52
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280-Insertion-52 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 4568666 - 4568551
Alignment:
| Q |
2 |
agaacaacccatttgggaaacagcagaactaataagaaagagtaaaaccaatgtcactgatgagtatattcgctctttcattgattatcaacatttgcat |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4568666 |
agaacaacccatttgggaaacagcagaactaataagaaagagtaaaaccaatgtcactgatgagtatgttcgctctttcattgattatcaacatttgcat |
4568567 |
T |
|
| Q |
102 |
tatgctgatgggatca |
117 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4568566 |
tatgctgatgggatca |
4568551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 18341768 - 18341663
Alignment:
| Q |
112 |
ggatcagtacacctggtctaagaatctattctaactatcaacaaattccgagagttttaggaggaatggggattgtaattctttctacttctaggggtat |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18341768 |
ggatcagtacacctggtctacgaatctattctaactatcaacaaattccgagagttttaggaggaatggggattgtaattctttctacttctaggggtat |
18341669 |
T |
|
| Q |
212 |
aatgac |
217 |
Q |
| |
|
|||||| |
|
|
| T |
18341668 |
aatgac |
18341663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 22100749 - 22100652
Alignment:
| Q |
120 |
acacctggtctaagaatctattctaactatcaacaaattccgagagttttaggaggaatggggattgtaattctttctacttctaggggtataatgac |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22100749 |
acacctggtctacgaatctattctaactatcaacaaattccgagagttttaggaggaatggggattgtaattctttctacttctaggggtataatgac |
22100652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 138588 - 138629
Alignment:
| Q |
112 |
ggatcagtacacctggtctaagaatctattctaactatcaac |
153 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
138588 |
ggatcagtacacctggtctacgaatctattctaactatcaac |
138629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 14604009 - 14603960
Alignment:
| Q |
113 |
gatcagtacacctggtctaagaatctattctaactatcaacaaattccga |
162 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
14604009 |
gatcaatacacctggtctacgaatttattctaactatcaacaaattccga |
14603960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 13168400 - 13168359
Alignment:
| Q |
112 |
ggatcagtacacctggtctaagaatctattctaactatcaac |
153 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13168400 |
ggatcagtacacctggtctacgaatctattctaactatcaac |
13168359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University