View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280-Insertion-54 (Length: 289)
Name: NF4280-Insertion-54
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280-Insertion-54 |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 24 - 265
Target Start/End: Complemental strand, 969 - 724
Alignment:
| Q |
24 |
tagttgatatattgataggaaatatttcatatgtcttatcaattgtnnnnnnngcatatggccaacattagcaagaataatgatttatgtggataaaaaa |
123 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
969 |
tagttgatatattgataggaaatatttcatatttcttatcaattgtaaaaaaagcatatggccaacattagcaagaataatgatttatgtagataaaaaa |
870 |
T |
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| Q |
124 |
tgaactgttaagcagaaaatagaaaat-aagcttaaaacgcagtttggatataggttctggaacacatacaagcacttaaacttgcatttagataatact |
222 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||| | | | | |||||||||||||||||||||||||||||| |
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| T |
869 |
tgaactgttaagcaaaaaatagaaaataaagcttaaaacgcagtttggatataggttttgggaaaaaaaaaagcacttaaacttgcatttagataatact |
770 |
T |
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| Q |
223 |
agagttttactgtcacgacaaagaaa---caatagtaactcttcac |
265 |
Q |
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| T |
769 |
agagttttactgtcaagacaaaaaaaaacaaatagtaactcttcac |
724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 24 - 265
Target Start/End: Complemental strand, 4649952 - 4649707
Alignment:
| Q |
24 |
tagttgatatattgataggaaatatttcatatgtcttatcaattgtnnnnnnngcatatggccaacattagcaagaataatgatttatgtggataaaaaa |
123 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4649952 |
tagttgatatattgataggaaatatttcatatttcttatcaattgtaaaaaaagcatatggccaacattagcaagaataatgatttatgtagataaaaaa |
4649853 |
T |
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| Q |
124 |
tgaactgttaagcagaaaatagaaaat-aagcttaaaacgcagtttggatataggttctggaacacatacaagcacttaaacttgcatttagataatact |
222 |
Q |
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| T |
4649852 |
tgaactgttaagcaaaaaatagaaaataaagcttaaaacgcagtttggatataggttttgggaaaaaaaaaagcacttaaacttgcatttagataatact |
4649753 |
T |
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| Q |
223 |
agagttttactgtcacgacaaagaaa---caatagtaactcttcac |
265 |
Q |
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| T |
4649752 |
agagttttactgtcaagacaaaaaaaaacaaatagtaactcttcac |
4649707 |
T |
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