View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4280-Insertion-56 (Length: 278)
Name: NF4280-Insertion-56
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280-Insertion-56 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 37868345 - 37868622
Alignment:
| Q |
1 |
aaaacattagtatattatatgtttcaaaa-agtgaatttgttgttaaaaattgtaagaaagagataaactcaaaatttaagaatcgttaattgaatcaag |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37868345 |
aaaacattagtatattatatgtttcaaaaaagtgaatttgttgttaaaaattgtaagaaagagataaactcaaaatttaagaatcgttaattgaatcaag |
37868444 |
T |
|
| Q |
100 |
gaacagttagtttaagaatcgtcataattgaatcaaagcaaattgaattttatcatttaagaacttatgctgttgtaataggattatagggtttctttta |
199 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37868445 |
gaagagttagtttaagaatcgtcataattgaatcaaagcaaattgaattttatcatttaagaacttatgctgttgtaataggattatagggtttctttta |
37868544 |
T |
|
| Q |
200 |
ttgagttgttgcttggtgtagagatatcgtccgttataacttataaggctctttttgtgtactctttttcctcctatg |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37868545 |
ttgagttgttgcttggtgtagagatatcgtccgttataacttttaaggctctttttgtatactctttttcctcctatg |
37868622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 9999457 - 9999404
Alignment:
| Q |
169 |
ctgttgtaataggattatagggtttcttttattgagttgttgcttggtgtagag |
222 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||||||||||||||||||| |||| |
|
|
| T |
9999457 |
ctgttgtaataggactataggtttttttttattgagttgttgcttggtggagag |
9999404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 29128122 - 29128162
Alignment:
| Q |
170 |
tgttgtaataggattatagggtttcttttattgagttgttg |
210 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
29128122 |
tgttgtaataggactatagggttttttttattgagttgttg |
29128162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University