View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280-Insertion-57 (Length: 252)
Name: NF4280-Insertion-57
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280-Insertion-57 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 2366280 - 2366523
Alignment:
| Q |
1 |
ggttcttattaccgtgatataagaaagatggcaacttcagaaatgctcaccaatcggcgtgttgaacaacaacaacattttcatatcttagaagtgcaac |
100 |
Q |
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| T |
2366280 |
ggttcttattaccgtgaaataagaaagatagcaacttcagaaatgctcaccaatcggcgtgttgaacaacaacaacattttcatatcttagaagtgcaac |
2366379 |
T |
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| Q |
101 |
ggtggattaaagagctcttcgatgtttggtttagtaaaaagaatgagtcatcaaactacgtgttggtggagatgaagcaatggttaactcaattgagttt |
200 |
Q |
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| T |
2366380 |
ggtggattaaagagctcttcgatgtttggtttagtaaaaagaatgagtcatcaaactacgtgttggtggagatgaagcaatggttaactcaattgagttt |
2366479 |
T |
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| Q |
201 |
caatattgttcttccaatgctggttggg-aacaatattttggtc |
243 |
Q |
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| T |
2366480 |
caatattgttcttccaatgctggttgggaaacaatattttggtc |
2366523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 2361695 - 2361928
Alignment:
| Q |
20 |
taagaaagatggcaacttcagaaatgctcaccaatcggcgtgttgaacaacaacaacattttcatatcttagaagtgcaacggtggattaaagagctctt |
119 |
Q |
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| T |
2361695 |
taaggaagattgcaacttcagagatcctcagccataggcatgtcgaacaacaacaatattttcatacctcagaagttcaggcgtggattaaagagctctt |
2361794 |
T |
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| Q |
120 |
cgatgtttggtttagtaaaaagaatgagtcatcaaactacgtgttggtggagatgaagcaatggttaactcaattgagtttcaatattgttcttccaatg |
219 |
Q |
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| T |
2361795 |
caatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttcaacattgttcttccagtg |
2361894 |
T |
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| Q |
220 |
ctggttggg-aacaatattttggtcctacgaatg |
252 |
Q |
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| T |
2361895 |
ctggttgggaaacgatattttggtgctacgaatg |
2361928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 2349447 - 2349532
Alignment:
| Q |
106 |
attaaagagctcttcgatgtttggtttagtaaaaagaatgagtca------tcaaactacgtgttggtggagatgaagcaatggtt |
185 |
Q |
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| T |
2349447 |
attaaagagctcttcgatgtttggtatagcaaaaagaaagagtcatatccgtcaaactatatgttggtggatttgaagcaatggtt |
2349532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 252
Target Start/End: Original strand, 41341688 - 41341835
Alignment:
| Q |
106 |
attaaagagctcttcgatgtttggtttagtaaaaagaatgagtcatcaaactacgtgttggtggagatgaagcaatggttaactcaattgagtttcaata |
205 |
Q |
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| T |
41341688 |
attaaagaggtctacaatgtttggtgtagtagagagaacaagtcatcaaactatgtgttggtggacttgaaacaatgttttactcaattgagtaaaaaca |
41341787 |
T |
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| Q |
206 |
ttgttcttccaatgctggttgggaa-caatattttggtcctacgaatg |
252 |
Q |
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| T |
41341788 |
ttgttcttccaatgttggttgggaagcgatattttggagctacgaatg |
41341835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 4303542 - 4303636
Alignment:
| Q |
105 |
gattaaagagctcttcgatgtttggtttagtaaaaagaat---gagtcatcaaactacgtgttggtggagatgaagcaatggttaactcaattga |
196 |
Q |
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| T |
4303542 |
gattaaagagctctacaatgtttggtgtcgtaaagagaacaacgagtcatcaaaatatttgatggtggaggtcaagcaatggtttactcaattga |
4303636 |
T |
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