View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4280-Insertion-58 (Length: 214)

Name: NF4280-Insertion-58
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4280-Insertion-58
NF4280-Insertion-58
[»] chr2 (13 HSPs)
chr2 (46-214)||(22331827-22331995)
chr2 (46-208)||(43641824-43641986)
chr2 (46-214)||(19434468-19434636)
chr2 (46-214)||(24840907-24841075)
chr2 (46-214)||(29113315-29113483)
chr2 (46-182)||(20272456-20272592)
chr2 (46-128)||(45618508-45618590)
chr2 (46-124)||(24561851-24561929)
chr2 (148-214)||(7320550-7320616)
chr2 (51-130)||(23166964-23167043)
chr2 (51-130)||(23578221-23578300)
chr2 (120-209)||(19659015-19659103)
chr2 (42-86)||(23799564-23799608)
[»] chr7 (19 HSPs)
chr7 (40-214)||(46473024-46473198)
chr7 (46-209)||(3193082-3193246)
chr7 (46-214)||(15978995-15979163)
chr7 (46-214)||(8564516-8564684)
chr7 (46-214)||(39292674-39292842)
chr7 (46-214)||(28719563-28719729)
chr7 (46-214)||(44306114-44306281)
chr7 (46-214)||(21539128-21539296)
chr7 (46-209)||(18080618-18080781)
chr7 (46-214)||(21675849-21676016)
chr7 (46-214)||(16382656-16382822)
chr7 (46-156)||(17985924-17986035)
chr7 (48-156)||(16369389-16369497)
chr7 (46-184)||(19066598-19066736)
chr7 (137-209)||(25123437-25123508)
chr7 (42-86)||(33556819-33556863)
chr7 (42-86)||(36301409-36301453)
chr7 (1-37)||(46472968-46473004)
chr7 (42-86)||(38294842-38294886)
[»] chr1 (5 HSPs)
chr1 (46-214)||(76952-77120)
chr1 (46-150)||(20822096-20822200)
chr1 (130-214)||(9785117-9785199)
chr1 (42-86)||(34392238-34392282)
chr1 (1-31)||(46144689-46144719)
[»] chr6 (11 HSPs)
chr6 (46-214)||(17857424-17857592)
chr6 (46-211)||(23220808-23220974)
chr6 (46-214)||(26505855-26506022)
chr6 (48-173)||(16375373-16375498)
chr6 (51-174)||(4228247-4228370)
chr6 (48-174)||(4172638-4172764)
chr6 (53-137)||(18104630-18104714)
chr6 (48-214)||(26523213-26523377)
chr6 (42-86)||(10445456-10445500)
chr6 (174-214)||(16135325-16135364)
chr6 (42-86)||(22594452-22594496)
[»] scaffold0231 (1 HSPs)
scaffold0231 (46-214)||(13857-14024)
[»] chr5 (8 HSPs)
chr5 (46-214)||(14342657-14342825)
chr5 (46-214)||(21108617-21108785)
chr5 (46-214)||(24226475-24226644)
chr5 (60-148)||(20455061-20455149)
chr5 (46-132)||(33627478-33627564)
chr5 (147-207)||(20313661-20313721)
chr5 (138-214)||(33150298-33150374)
chr5 (120-198)||(20833017-20833094)
[»] scaffold0183 (1 HSPs)
scaffold0183 (48-214)||(9923-10089)
[»] chr8 (16 HSPs)
chr8 (46-214)||(19332506-19332675)
chr8 (46-214)||(20176875-20177042)
chr8 (46-214)||(20221602-20221769)
chr8 (50-214)||(11543625-11543789)
chr8 (50-214)||(22312780-22312943)
chr8 (46-214)||(25295077-25295245)
chr8 (46-131)||(3845119-3845204)
chr8 (46-214)||(25757097-25757265)
chr8 (51-214)||(17501040-17501203)
chr8 (46-162)||(18118990-18119100)
chr8 (46-214)||(45560108-45560276)
chr8 (138-214)||(34012956-34013032)
chr8 (46-160)||(24906904-24907018)
chr8 (117-157)||(18122570-18122610)
chr8 (1-31)||(7469167-7469197)
chr8 (1-31)||(45560350-45560380)
[»] chr4 (10 HSPs)
chr4 (46-210)||(12134646-12134810)
chr4 (46-205)||(54364471-54364630)
chr4 (46-214)||(17376449-17376618)
chr4 (51-182)||(17212893-17213024)
chr4 (46-148)||(5371655-5371757)
chr4 (111-214)||(10238436-10238539)
chr4 (57-162)||(14570375-14570480)
chr4 (48-191)||(9651344-9651487)
chr4 (161-214)||(19082114-19082167)
chr4 (42-86)||(9621748-9621792)
[»] scaffold1204 (1 HSPs)
scaffold1204 (70-214)||(1133-1277)
[»] chr3 (16 HSPs)
chr3 (46-214)||(17759333-17759500)
chr3 (46-214)||(19060653-19060820)
chr3 (42-214)||(40040117-40040289)
chr3 (46-209)||(25104972-25105135)
chr3 (46-214)||(8603729-8603899)
chr3 (42-214)||(37917368-37917540)
chr3 (108-214)||(15549573-15549679)
chr3 (112-214)||(18738909-18739009)
chr3 (48-131)||(17392452-17392535)
chr3 (121-209)||(13327569-13327656)
chr3 (112-205)||(11883276-11883367)
chr3 (139-209)||(17937567-17937635)
chr3 (42-86)||(12918084-12918128)
chr3 (42-86)||(45804098-45804142)
chr3 (137-209)||(51962165-51962236)
chr3 (46-85)||(38376831-38376870)
[»] scaffold0079 (1 HSPs)
scaffold0079 (46-214)||(5016-5182)
[»] scaffold0090 (3 HSPs)
scaffold0090 (45-209)||(4272-4436)
scaffold0090 (46-128)||(35786-35868)
scaffold0090 (45-97)||(1-53)
[»] scaffold0017 (1 HSPs)
scaffold0017 (46-214)||(11690-11856)
[»] scaffold0047 (1 HSPs)
scaffold0047 (48-214)||(76083-76249)
[»] scaffold0013 (1 HSPs)
scaffold0013 (46-214)||(8121-8288)
[»] scaffold1957 (1 HSPs)
scaffold1957 (46-207)||(812-973)
[»] scaffold0452 (1 HSPs)
scaffold0452 (54-214)||(8432-8591)
[»] scaffold1278 (1 HSPs)
scaffold1278 (48-174)||(567-693)
[»] scaffold0032 (1 HSPs)
scaffold0032 (68-194)||(118544-118670)
[»] scaffold0317 (1 HSPs)
scaffold0317 (46-174)||(14781-14909)
[»] scaffold0468 (1 HSPs)
scaffold0468 (46-214)||(12001-12169)
[»] scaffold0005 (1 HSPs)
scaffold0005 (57-162)||(246896-247001)
[»] scaffold0205 (2 HSPs)
scaffold0205 (137-214)||(7152-7229)
scaffold0205 (146-182)||(7118-7154)
[»] scaffold0009 (1 HSPs)
scaffold0009 (46-128)||(255373-255456)
[»] scaffold0258 (1 HSPs)
scaffold0258 (48-214)||(9153-9317)
[»] scaffold0174 (2 HSPs)
scaffold0174 (148-214)||(21016-21081)
scaffold0174 (46-111)||(21081-21146)
[»] scaffold0028 (1 HSPs)
scaffold0028 (48-128)||(39114-39194)
[»] scaffold0601 (1 HSPs)
scaffold0601 (46-86)||(2124-2164)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 22331827 - 22331995
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22331827 atatcttcatataatcatatcaaactatccacaaaagatttgccaagtatttggtcttaaagattatttttgacaaagttcgtctctcatattacaactt 22331926  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22331927 taacataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 22331995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 43641824 - 43641986
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||     
T  43641824 atatcttcatataatcatatcaaactatctacaatagatttgccaagtatttggtcttaaagattattttcgacaaagttcgtctctcattctacaactc 43641923  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtat 208  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||    
T  43641924 taaaataattgagacaaatgaacaaaaaccaagtatataaactctagggcctcgactatgtat 43641986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 19434636 - 19434468
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||||||||||||| |||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||  |||||||     
T  19434636 atatcttcatataatcatatcaaactatctacaatagatttgccaattatttggtcttaaagattattttcgacaaagttcgtctctcattctacaactc 19434537  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||| ||||    
T  19434536 taaaataattgagacaaatgaaccaaaaccaagtatataaactctagggcctcgactatgcatacactt 19434468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 24840907 - 24841075
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    |||| |||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||    
T  24840907 atatattcatataataatagaaaactatccacaaaagatttgccaagtatttggtcttaaagattattttcgacaaagttcgtttctcattttagaactt 24841006  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||    
T  24841007 taaaataattgagacaattgaaccaaaaccaattaaataaactctagggcctcgactatttatacactt 24841075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 29113315 - 29113483
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||| ||||||||| |||||||||    
T  29113315 atatcttcatataatcataacaaactattcacaaaagatttgccaagtaattggtcttaaagattattttcgacaaggtttgtctctcattttacaactt 29113414  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||||||    
T  29113415 taaaatagttgagacaaatgaaccaaaaccaagtaaataaactcttggggctcaactatgtataaactt 29113483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 20272456 - 20272592
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||| |||||||||||||| |||||||  || ||||| |||||||||||||||||||||||||||||||||| || |||||||||    
T  20272456 atatcttcatataatcataacaaactatccacaagagatttgtcaattatttagtcttaaagattattttcgacaaagttcgtctcttattttacaactt 20272555  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaa 182  Q
    |||||||||||| |||||| || ||||||||| ||||    
T  20272556 taaaataattgaaacaattaaatcaaaaccaaataaa 20272592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 45618508 - 45618590
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgt 128  Q
    |||||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||    
T  45618508 atatcttcatataatcatatcaaattatccacaaaagatttaccaagtaattggtcttaaagattattttcgacaaagttcgt 45618590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 24561929 - 24561851
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagt 124  Q
    ||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  24561929 atatcttcatataatcatatcaaacaatctacaaaagattttctaagtatttggtcctaaagattattttcgacaaagt 24561851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 7320550 - 7320616
Alignment:
Q  148 aaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  7320550 aaataattgagacaaatgaaccaaaaccaagtatataaactctagggcctcgactatgtatacactt 7320616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 23167043 - 23166964
Alignment:
Q  51 ttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtct 130  Q
    ||||||||||||||||||||| | |||||||| || || | ||||| || ||||||||| |||||  |||||||||||||    
T  23167043 ttcatataatcatatcaaactgttcacaaaaggttcgcaaggtattcggccttaaagatcatttttaacaaagttcgtct 23166964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 23578300 - 23578221
Alignment:
Q  51 ttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtct 130  Q
    ||||||||||||||||||||| | |||||||| || || | ||||| || ||||||||| |||||  |||||||||||||    
T  23578300 ttcatataatcatatcaaactgttcacaaaaggttcgcaaggtattcggccttaaagatcatttttaacaaagttcgtct 23578221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 19659015 - 19659103
Alignment:
Q  120 aaagttcgtctctcatattacaactttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtata 209  Q
    ||||| |||||||| | ||| |||||||||| ||| ||||||||||||||||||| ||||| ||||||  |||| |||| || |||||||    
T  19659015 aaagtccgtctctccttttataactttaaaacaat-gagacaattgaaccaaaactaagtatataaaccttaggacctcaaccatgtata 19659103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 23799564 - 23799608
Alignment:
Q  42 tcaaatatcttcatataatcatatcaaactatccacaaaagattt 86  Q
    |||||||||  ||||||||||||||||| ||||||||||| ||||    
T  23799564 tcaaatatccccatataatcatatcaaattatccacaaaatattt 23799608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 40 - 214
Target Start/End: Original strand, 46473024 - 46473198
Alignment:
Q  40 tgtcaaatatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatatta 139  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46473024 tgtcacatatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttgatcttaaagattattttcgacaaagttcgtctctcatatta 46473123  T
Q  140 caactttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||    
T  46473124 caactttaaaataattgagacaattgaacaaaaatcaagtaaataaactctaaggcctcgactatgtataaactt 46473198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 3193246 - 3193082
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  3193246 atatcttcatataatcatatcaaactatccacaaaagatttgccaagtatttggtcttaaagattattttcgacaaagttcgtctcacattttacaactt 3193147  T
Q  146 t-aaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtata 209  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3193146 taaaaataattgagacaaatgaaccaaaaccaagtaaataaactctagggcctcgactatgtata 3193082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 15979163 - 15978995
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| ||||||||| |||||||||    
T  15979163 atatcttcatataatcatatcaaactatccacaaaagatttgccaagtatttggtcttaacgattatttttgacaaagtttgtctctcattttacaactt 15979064  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15979063 taaaataattgagacaaatgaaccaaaaccaagtaaataaactctagggcctcgactatgtatacactt 15978995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 8564684 - 8564516
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||| ||||||||||||| ||||||| | |||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||    
T  8564684 atatcttcatataatcatagcaaactatccacataagattttccaagtatttggacttaaagattatttttgacaaaattcgtctctcatattacaactt 8564585  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  8564584 taaaataattgagacaattgaaccaaaactaagaaaataaactctagggcctcgactatgtataaactt 8564516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 39292842 - 39292674
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39292842 atatcttcatataatcatatcaaactatccacaaacaatttgccaagtatttggtcttaaagattattttcgacaaagttcgtctctcattttacaactt 39292743  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||| ||||||||||||||||||||||| | | |||||||||||||||||| ||||    
T  39292742 taaaataattgagacaaatgaaccaaaaccaagtaaataaattatggggcctcgactatgtatacactt 39292674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 28719563 - 28719729
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    |||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  28719563 atatcttcatataatcatatcaaattatccacaaaagattttccaagtatttggtcttaa-gattattttcgacaaagttcatctctcatattacaactt 28719661  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  28719662 taaaataattgagacaaatgaaccaaaaccaagtaaataaactcta-ggcctcgactatgtatacactt 28719729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 44306281 - 44306114
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  44306281 atatcttcatataatcatatcaaactatccacaaaagattttccaagtatttggtcttta-gattattttcgacaaagttcgtctctcatattacaactt 44306183  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| |||| ||||    
T  44306182 taaaataattgagacaaattaaccaaaaccaagtaaataaactctagggccttgactatatatacactt 44306114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 21539296 - 21539128
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    |||||||||||||| |||| | |||||||||| |||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||    
T  21539296 atatcttcatataaacataaccaactatccaccaaagatttgccaagtattaggtcttaaagattattttcaacaaagttcgtctctcattttacaactt 21539197  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  21539196 taaaataattgagacaaatgaaccaaaaccaagtaaataaactctaggacctcgactatgtatagactt 21539128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 18080781 - 18080618
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||| |||||||||| || ||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||  |||||||||    
T  18080781 atatcttcacataatcatataaagctatccacaaaagattttccaagtaattggtcttaaagattattttcgacaaagttcgtctctcaatttacaactt 18080682  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtata 209  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||  ||| ||||||||||||||    
T  18080681 taaaataattgagacaaatgaagcaaaaccaagtaaataaattcaggggtctcgactatgtata 18080618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 21676016 - 21675849
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    |||| |||||||| |||||  |||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||| |||||||||    
T  21676016 atatattcatatagtcatagaaaactatccacaaaagatttgccaagtatttggtcttaa-gattatttccgacaaagttcgtctctcattttacaactt 21675918  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||| ||||||||||| |||| ||||||||| |||||||||||||||| ||| |||||||||| ||||    
T  21675917 taaaacaattgagacaaatgaatcaaaaccaaataaataaactctagggtctctactatgtatacactt 21675849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 16382656 - 16382822
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcat----attaca 141  Q
    ||||||||||||||||||| | |||||||| |||||||       |||| ||||||||||||||||||||||||||||||| ||||||||    ||||||    
T  16382656 atatcttcatataatcataacgaactatccgcaaaaga-------agtaattggtcttaaagattattttcgacaaagttcatctctcattttaattaca 16382748  T
Q  142 actttaaaataattgagacaattgaac-caaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||||||||||||||| ||||    
T  16382749 actttaaaataattgagacaaatgaacttaaaaacaagtaaataaactctagggcctcgactatgtatacactt 16382822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 46 - 156
Target Start/End: Complemental strand, 17986035 - 17985924
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtctt-aaagattattttcgacaaagttcgtctctcatattacaact 144  Q
    ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| |||||||| ||||||||    
T  17986035 atatcttcatataattatatcaaactatccacaaaagatttgccatgtatttggtctttaaagattattttcgacaaagttcatctctcattttacaact 17985936  T
Q  145 ttaaaataattg 156  Q
    ||||||||||||    
T  17985935 ttaaaataattg 17985924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 16369497 - 16369389
Alignment:
Q  48 atcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaacttta 147  Q
    |||| |||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||| |||||||| |||| ||| |||||||    
T  16369497 atctacatatagtcatatcaaactatccacaaaagatttgtcaagtatttggtcttaaagattactttcgacaaggttcgtctatcattttaaaacttta 16369398  T
Q  148 aaataattg 156  Q
    || ||||||    
T  16369397 aagtaattg 16369389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 19066598 - 19066736
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtctt-aaagattattttcgacaaagttcgtctctcatattacaact 144  Q
    |||||| || ||||||||  |||||||| | |||| | ||||| |||||||||||| | ||| |||||||||||||| ||||||||||||| ||||||||    
T  19066598 atatctccacataatcatcacaaactattctcaaaggttttgc-aagtatttggtcctcaaatattattttcgacaaggttcgtctctcattttacaact 19066696  T
Q  145 ttaaaataattgagacaattgaaccaaaaccaagtaaata 184  Q
    ||||||||||||| |||| | || ||| |||||| |||||    
T  19066697 ttaaaataattgaaacaagtaaatcaagaccaagcaaata 19066736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 25123437 - 25123508
Alignment:
Q  137 ttacaactttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtata 209  Q
    |||||||||||||| ||| |||||||||||||||||||  |||| |||||||||||| |||| || |||||||    
T  25123437 ttacaactttaaaacaat-gagacaattgaaccaaaactgagtatataaactctaggacctcaaccatgtata 25123508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 33556863 - 33556819
Alignment:
Q  42 tcaaatatcttcatataatcatatcaaactatccacaaaagattt 86  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  33556863 tcaaatatctccatataatcatatcaaattatccacaaaagattt 33556819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 36301453 - 36301409
Alignment:
Q  42 tcaaatatcttcatataatcatatcaaactatccacaaaagattt 86  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  36301453 tcaaatatctccatataatcatatcaaattatccacaaaagattt 36301409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 46472968 - 46473004
Alignment:
Q  1 atcatatagttcaacaactccatacaacttcatacaa 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  46472968 atcatatagttcaacaactccatacaacttcatacaa 46473004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 38294842 - 38294886
Alignment:
Q  42 tcaaatatcttcatataatcatatcaaactatccacaaaagattt 86  Q
    |||||||||| ||||||||||||||||  ||||||||||||||||    
T  38294842 tcaaatatctccatataatcatatcaatttatccacaaaagattt 38294886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 77120 - 76952
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  77120 atatcttcatataatcataacaaactatccacaaaagatttgccaagtatttggtcttaaagattattttcgacaaagtttgtctctcatattacaactt 77021  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  77020 taaaataattgagacaattgagccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 76952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 20822096 - 20822200
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  20822096 atatcttcatataatcataacaaactatccacaaaatatttgcaaagtatttggtcttaaagattatttccgacaaagttcgtctctcattttacaactt 20822195  T
Q  146 taaaa 150  Q
    |||||    
T  20822196 taaaa 20822200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 9785199 - 9785117
Alignment:
Q  130 tctcatattacaactttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    |||||| | |||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  9785199 tctcatttcacaactttaaaacaat-gagacaattgaaccaaaaccaagtaaataaactcta-ggcctcgactacgtatacactt 9785117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 34392238 - 34392282
Alignment:
Q  42 tcaaatatcttcatataatcatatcaaactatccacaaaagattt 86  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  34392238 tcaaatatctccatataatcatatcaaattatccacaaaagattt 34392282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 46144689 - 46144719
Alignment:
Q  1 atcatatagttcaacaactccatacaacttc 31  Q
    |||||||||||||||||||||||||||||||    
T  46144689 atcatatagttcaacaactccatacaacttc 46144719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 17857592 - 17857424
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17857592 atatcttcatataatcatatcaaactatccaaaaaagatttgccaagtatttggtcttaaagattattttcgacaaagttcgtctctcattttacaactt 17857493  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17857492 taaaataattgagacaaatgaaccaaaaccaagtaaataaactctagggcctcgactatgtatacactt 17857424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 46 - 211
Target Start/End: Original strand, 23220808 - 23220974
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaa-gatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaact 144  Q
    ||||||||||||||| |||||||| |||||| |||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23220808 atatcttcatataataatatcaaattatccagaaaaagatttggcaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaact 23220907  T
Q  145 ttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23220908 ttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggtctcgactatgtataaa 23220974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 26505855 - 26506022
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26505855 atatcttcatttaatcatatcaaactatccacaaaagatttgccaagtaattggtcttaaagattattttcgacaaagttcgtctctcattttacaactt 26505954  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||| ||||    
T  26505955 taatataattgagacaa-tgagccaaaaccaagtaaataaactctagggcctcgacaatgtatatactt 26506022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 16375373 - 16375498
Alignment:
Q  48 atcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaacttta 147  Q
    |||||||||||||||||||||||||||| ||||| ||||   ||||||| ||||||||||||||||||||||||||||||||| |||| | |||||||||    
T  16375373 atcttcatataatcatatcaaactatccccaaaatatttttcaagtattaggtcttaaagattattttcgacaaagttcgtctatcatttaacaacttta 16375472  T
Q  148 aaataattgagacaattgaaccaaaa 173  Q
    ||||||||||  ||||||||||||||    
T  16375473 aaataattgaagcaattgaaccaaaa 16375498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 4228370 - 4228247
Alignment:
Q  51 ttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactttaaaa 150  Q
    ||||||||||||| ||||||||| |||||||||||||| |  |||| |||||||||||| |||||||||||||||||||| |||| |||||||||||| |    
T  4228370 ttcatataatcatgtcaaactattcacaaaagatttgcaagatattcggtcttaaagatcattttcgacaaagttcgtctatcattttacaactttaaca 4228271  T
Q  151 taattgagacaattgaaccaaaac 174  Q
     |||||||||||||||||||||||    
T  4228270 caattgagacaattgaaccaaaac 4228247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 4172764 - 4172638
Alignment:
Q  48 atcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaacttta 147  Q
    |||||||||||||||| ||||||||| |||||||||||||| |  ||||   |||||||||| |||||||||||||||||||| |||| |||||||||||    
T  4172764 atcttcatataatcatgtcaaactattcacaaaagatttgcaagatattcaatcttaaagatcattttcgacaaagttcgtctatcattttacaacttta 4172665  T
Q  148 aaataattgagacaattgaaccaaaac 174  Q
    | | |||||||||||||||||||||||    
T  4172664 acacaattgagacaattgaaccaaaac 4172638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 18104714 - 18104630
Alignment:
Q  53 catataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatat 137  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||    
T  18104714 catataatcatatcaaactatccacgaaagatttgccaagtatttgatcttaaagattattttcgacaaagttcgcctctcatat 18104630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 214
Target Start/End: Complemental strand, 26523377 - 26523213
Alignment:
Q  48 atcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaacttta 147  Q
    |||||| |||||||||||||| |||| |||||||||||||  ||||| | |||||||||||| ||||  ||| |||||||| | || | | ||||||||     
T  26523377 atcttcgtataatcatatcaagctatacacaaaagatttgaaaagtactcggtcttaaagatcatttctgac-aagttcgtatgtcgtttcacaacttt- 26523280  T
Q  148 aaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
     || |||||||||||||||| | |||| ||  ||||||| ||||  ||||| |||||||||| ||||    
T  26523279 gaagaattgagacaattgaatccaaactaaccaaataaattctactgcctcaactatgtatacactt 26523213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 10445456 - 10445500
Alignment:
Q  42 tcaaatatcttcatataatcatatcaaactatccacaaaagattt 86  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  10445456 tcaaatatctccatataatcatatcaaattatccacaaaagattt 10445500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 16135325 - 16135364
Alignment:
Q  174 ccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  16135325 ccaagtaaataaactcta-ggcctcgactatgtatacactt 16135364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 22594496 - 22594452
Alignment:
Q  42 tcaaatatcttcatataatcatatcaaactatccacaaaagattt 86  Q
    |||||||||||||||||||||||| || |||| || |||||||||    
T  22594496 tcaaatatcttcatataatcatataaatctattcataaaagattt 22594452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 14024 - 13857
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  14024 atatcttcatataatcataacaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagctcgtctctcattttacaactt 13925  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  13924 taaaataattgagacaaatgaaccaaaaccaagtaaat-aactctagggcctcgactatgtatacactt 13857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 14342825 - 14342657
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    |||||||||| |||||| ||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14342825 atatcttcatttaatcacatcaaactatccacacaagatttgccaaatatttggtcttaaagattattttcgacaaagttcgtatctcatattacaactt 14342726  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  14342725 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatggatacactt 14342657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 21108617 - 21108785
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||| | |||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21108617 atatcttcatataatcataacgaactatccgcaaaagatttgacaagtatttggtcttaaagattattttcgacaaagttcgtctctcattttacaactt 21108716  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||||    
T  21108717 taaaacaattgagacaaatgaaccaataccaagtaaataaactctagggcttcgactatgtatacactt 21108785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 24226644 - 24226475
Alignment:
Q  46 atatcttcatataatcatatcaaacta-tccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaact 144  Q
    ||||||||||||||||||||||||||| || | || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  24226644 atatcttcatataatcatatcaaactaatctataatagatttgccaagtatttggtcttaaagattattttcgacaaagttcgtctctcattctacaact 24226545  T
Q  145 ttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
     ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  24226544 ctaaaataattgagacaaatgaaccaaaaccaagtatataaactctagggcctcgactatgtatacactt 24226475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 20455149 - 20455061
Alignment:
Q  60 tcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactttaa 148  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| || |||||| || ||||||||||||    
T  20455149 tcatatcaaactatccacaaaagatttgccaagtatttgctcttaaagattattttcgacaaaatttgtctcttattttacaactttaa 20455061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 33627564 - 33627478
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctct 132  Q
    |||||| |||||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  33627564 atatctccatataatcataacaaattatccacaaaaaatttgctaagtatttgatcttaaagattattttcgacaaagttcatctct 33627478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 20313661 - 20313721
Alignment:
Q  147 aaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgta 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20313661 aaaataattgagacaaatgaaccaaaaccaagtaaataaactctagggcctcgactatgta 20313721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 33150374 - 33150298
Alignment:
Q  138 tacaactttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| ||||    
T  33150374 tacaactctaaaataattgagacaaatgaaccaaaaccaagtatataaactttagggcctcgactatgtatacactt 33150298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 20833094 - 20833017
Alignment:
Q  120 aaagttcgtctctcatattacaactttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctc 198  Q
    ||||| ||||| || | |||||||||||||| ||| ||||||||||||||||||| ||||| |||||| ||||| ||||    
T  20833094 aaagtccgtctttccttttacaactttaaaacaat-gagacaattgaaccaaaactaagtatataaaccctaggacctc 20833017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 9923 - 10089
Alignment:
Q  48 atcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaacttta 147  Q
    ||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  9923 atcttcatataatcatatcaaactatcaacaaaagattagccaagtatttggtcttaaagattattttcaacaaagttcgtctctcattttacaacttta 10022  T
Q  148 aaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  10023 aaataattgagacaaatgaaccaaaaccaagtaaataaactctagggcctcgactacgtatacactt 10089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 19332675 - 19332506
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaa-gatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaact 144  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  19332675 atatcttcatataatcatatcaaactatccacaaaaagatttgctaagcaattggtcttaaaaattattttcgacaaggttcgtctctcattttacaact 19332576  T
Q  145 ttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19332575 ttaaaataattgagacaaatgaaccaaaaccaagtaaataaactctagggcctcgactatgtatacactt 19332506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 20177042 - 20176875
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  20177042 atatcttcatataatcatatcaaactatccacaaaagattttccaagtatttggtcttta-gattattttcgacaaagttcgtctctcatattacaactt 20176944  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| |||| ||||    
T  20176943 taaaataattgagacaaattaaccaaaaccaagtaaataaactctagggccttgactatatatacactt 20176875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 20221769 - 20221602
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  20221769 atatcttcatataatcatatcaaactatccacaaaagattttccaagtatttggtcttta-gattattttcgacaaagttcgtctctcatattacaactt 20221671  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| |||| ||||    
T  20221670 taaaataattgagacaaattaaccaaaaccaagtaaataaactctagggccttgactatatatacactt 20221602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 11543625 - 11543789
Alignment:
Q  50 cttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactttaaa 149  Q
    |||||| |||||||| |||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  11543625 cttcatttaatcataacaaactatcctcaaaagatttgacaagtatttggtcttaaagattattttcgacaaagttcgtctctcaatttacaactttaaa 11543724  T
Q  150 ataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| ||||    
T  11543725 ataattgagacaaatgaaccaaaaccaagtaattaaattctagggcctcgactatgtatacactt 11543789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 22312780 - 22312943
Alignment:
Q  50 cttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactttaaa 149  Q
    |||||| | |||||| |||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  22312780 cttcatttcatcataacaaactattcacaaaagatttgccaagtatttcgtcttaaaaattattttcgacaaagttcgtctctcattctacaactttaaa 22312879  T
Q  150 ataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    |||||||| ||||  |||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  22312880 ataattgatacaa-agaaccaaaaccaagtagataaactctagggcctcgactatgtatacactt 22312943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 25295077 - 25295245
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagatt-attttcgacaaagttcgtctctcatattacaact 144  Q
    |||||||||||||||||||| ||  ||||||||||| ||||   | ||| ||||  |||||||   |||||||||||||||||||||||||   ||||||    
T  25295077 atatcttcatataatcatataaagatatccacaaaatatttataaggtaattggctttaaagaaccattttcgacaaagttcgtctctcattacacaact 25295176  T
Q  145 ttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    | | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25295177 t-agaataattgagacaaatgaaccaaaaccaagtaaataaactctagggcctcgactatgtatacactt 25295245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 3845204 - 3845119
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctc 131  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  3845204 atatctttatataatcatatcaaactatccacaaaagatttgccaagtatttggtcttacagattattttcgacaaagttcgtctc 3845119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 25757097 - 25757265
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagatt-attttcgacaaagttcgtctctcatattacaact 144  Q
    |||||||||||||||||||| ||  ||||||||||| ||||   | ||| ||||  |||||||   |||||||||||||| ||||||||||   ||||||    
T  25757097 atatcttcatataatcatataaagatatccacaaaatatttataaggtaattggctttaaagaaccattttcgacaaagtacgtctctcattacacaact 25757196  T
Q  145 ttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    | | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25757197 t-agaataattgagacaaatgaaccaaaaccaagtaaataaactctagggcctcgactatgtatacactt 25757265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 214
Target Start/End: Original strand, 17501040 - 17501203
Alignment:
Q  51 ttcatataatcatatcaaactatccacaaaagatttgctaag-tatttggtctta--aagattattttcgacaaagttcgtctctcatattacaacttta 147  Q
    ||||| ||||||||| || ||||||||||||||||   |||| || |||||||||  || |||||||||||||||||||||||||||| |||||||| ||    
T  17501040 ttcatttaatcatataaagctatccacaaaagatta--taaggtaattggtcttacaaaaattattttcgacaaagttcgtctctcattttacaactcta 17501137  T
Q  148 aaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||  |||||| || ||||||| ||||||||||| |||||||||||||||| ||||    
T  17501138 aaataattgagacagatgaacc-aatccaagtatataaactctagtgcctcgactatgtatacactt 17501203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 18119100 - 18118990
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||      ||||||||||||||||||||||||  |||||| ||    
T  18119100 atatcttcatataatcatatcaaactatccacaaaagatttgccaagtatttgatctta------attttcgacaaagttcgtctctcactttacaattt 18119007  T
Q  146 taaaataattgagacaa 162  Q
    |||||||||||| ||||    
T  18119006 taaaataattgaaacaa 18118990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 45560276 - 45560108
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagatt-attttcgacaaagttcgtctctcatattacaact 144  Q
    |||||||||||||||||||| |   ||||||||||||||||   | ||| ||||  |||||||   |||||||||||||| |||||||  |   ||||||    
T  45560276 atatcttcatataatcatataatgatatccacaaaagatttataaggtaattggctttaaagaaccattttcgacaaagtccgtctctacttacacaact 45560177  T
Q  145 ttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    | | || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45560176 t-agaacaattgagacaaatgaaccaaaaccaagtaaataaactctagggcctcgactatgtatacactt 45560108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 34013032 - 34012956
Alignment:
Q  138 tacaactttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| ||||    
T  34013032 tacaactctaaaataattgagacaaatgaaccaaaaccaagtatataaactttagggcctcgactatgtatacactt 34012956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 24906904 - 24907018
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    |||||||||||||||||||| |  |||| ||||||||||||   | ||| | ||||||| ||||||||||||||||  |||||||||||| || ||||||    
T  24906904 atatcttcatataatcatataaggctattcacaaaagatttataaggtaatcggtcttagagattattttcgacaagattcgtctctcattttgcaactt 24907003  T
Q  146 taaaataattgagac 160  Q
    |||| ||||||||||    
T  24907004 taaattaattgagac 24907018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 18122610 - 18122570
Alignment:
Q  117 gacaaagttcgtctctcatattacaactttaaaataattga 157  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  18122610 gacaaagttcgtctctcactttacaactttaaaataattga 18122570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 7469167 - 7469197
Alignment:
Q  1 atcatatagttcaacaactccatacaacttc 31  Q
    |||||||||||||||||||||||||||||||    
T  7469167 atcatatagttcaacaactccatacaacttc 7469197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 45560380 - 45560350
Alignment:
Q  1 atcatatagttcaacaactccatacaacttc 31  Q
    |||||||||||||||||||||||||||||||    
T  45560380 atcatatagttcaacaactccatacaacttc 45560350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 46 - 210
Target Start/End: Complemental strand, 12134810 - 12134646
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  12134810 atatcttcatataatcataacaaactatacacaaaagatttgccaagtatttggtgttaaagattattttcgacaaagttcgtctctcaaattacaactt 12134711  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataa 210  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||    
T  12134710 taaaataattgagacaattgaaccaaaatcaagtaaataaactctaggacctcaactatgtataa 12134646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 46 - 205
Target Start/End: Complemental strand, 54364630 - 54364471
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    |||||||| |||||||||||||||||||| ||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||| |||||||||    
T  54364630 atatcttcgtataatcatatcaaactatctacaaaagattttccaagtatttgggcctaaagattattttcgacaaagttcgtctctcattttacaactt 54364531  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatg 205  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  54364530 taaaataattgagacaaatgaaccaaaaccaagtaaataaattctagggcctcgactatg 54364471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 17376618 - 17376449
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||||| ||||| || | |||||||    
T  17376618 atatcttcatacaatcatatcaaactatccacaaaagattttccaagtatttggtcttaaagattcttttcaacaaagttcatctcttatttcacaactt 17376519  T
Q  146 taaaataattgagacaattgaaccaaaaccaagt-aaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||| || ||||||| |||||| |||||| ||||||||||||||| |||||||||||||| ||||    
T  17376518 taaaataatggaaacaattggaccaaagccaagtaaaataaactctagggtctcgactatgtatacactt 17376449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 17213024 - 17212893
Alignment:
Q  51 ttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactttaaaa 150  Q
    |||||||||||||||||||||||||||||||||||||  || |||||| |||||||||||||||| ||||||||| |||| |||| ||||||||||||||    
T  17213024 ttcatataatcatatcaaactatccacaaaagatttgtcaaatatttgatcttaaagattatttttgacaaagtttgtctatcattttacaactttaaaa 17212925  T
Q  151 taattgagacaattgaaccaaaaccaagtaaa 182  Q
    |||||||  |||||||| ||||||||| ||||    
T  17212924 taattgaagcaattgaaacaaaaccaattaaa 17212893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 5371757 - 5371655
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||  |||||| || |||||||||    
T  5371757 atatcttcatataatcatatcaaactatccacaaaagatttgccaagtatttactcttaaagattattttcgacaaagtatgtctcttattttacaactt 5371658  T
Q  146 taa 148  Q
    |||    
T  5371657 taa 5371655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 10238539 - 10238436
Alignment:
Q  111 attttcgacaaagttcgtctctcatattacaactttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataa 210  Q
    ||||| ||||||||||  ||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||     
T  10238539 atttttgacaaagttcaactctcattttacaactttaaaataattgagacaaatgaactaacaccaagtaaataaactctagggcctcgactatgtatac 10238440  T
Q  211 actt 214  Q
    ||||    
T  10238439 actt 10238436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 14570375 - 14570480
Alignment:
Q  57 taatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactttaaaataattg 156  Q
    |||||| || || |||| |||||||||||||  |||||| | ||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||    
T  14570375 taatcacataaagctattcacaaaagatttgtcaagtatcttgtcttaaagattattttcgacaaggttcgtctatcattttacaactttaaaataattg 14570474  T
Q  157 agacaa 162  Q
    | ||||    
T  14570475 aaacaa 14570480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 191
Target Start/End: Original strand, 9651344 - 9651487
Alignment:
Q  48 atcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaacttta 147  Q
    ||||||||| |||||||||||||||| |||||| | ||||| || ||||  || | |||||| |||||||||||||||||||| || | | ||||||| |    
T  9651344 atcttcatacaatcatatcaaactattcacaaatggtttgcaaaatattcagtttcaaagatcattttcgacaaagttcgtctatcgtttcacaacttaa 9651443  T
Q  148 aaataattgagacaattgaaccaaaaccaagtaaataaactcta 191  Q
    ||  ||||  || ||||||| |||||| ||| ||| ||| ||||    
T  9651444 aatcaattatgaaaattgaatcaaaactaagcaaacaaattcta 9651487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 19082167 - 19082114
Alignment:
Q  161 aattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    |||||||||||||| ||||||| ||| ||||| ||||| |||||||||| ||||    
T  19082167 aattgaaccaaaactaagtaaacaaattctagtgcctcaactatgtatacactt 19082114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 9621748 - 9621792
Alignment:
Q  42 tcaaatatcttcatataatcatatcaaactatccacaaaagattt 86  Q
    |||||||||| | ||||||||||||||| ||| ||||||||||||    
T  9621748 tcaaatatctccgtataatcatatcaaattattcacaaaagattt 9621792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1204 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: scaffold1204
Description:

Target: scaffold1204; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 70 - 214
Target Start/End: Complemental strand, 1277 - 1133
Alignment:
Q  70 ctatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactttaaaataattgagacaattgaacc 169  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1277 ctatccacaaaagatttgccaagtatttgatcttaaagattattttcgacaaagttcgtctctcatattacaactttaaaataattgagacaactgaacc 1178  T
Q  170 aaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  1177 aaaatcaagtaaataaactctagggcctcgactatgtatacactt 1133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 17759500 - 17759333
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    |||||| |||||||||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17759500 atatctccatataatcataacaaactatgcacaaaagattttccaagtatttggtcttaaagattattttcgacaaagttcgtctctcataatacaactt 17759401  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||    
T  17759400 taaaataattgagacaattgaaccaaaaccaagaaaataaactcta-gccctcgactatgtatacactt 17759333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 19060820 - 19060653
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    |||||| |||||||||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19060820 atatctccatataatcataacaaactatgcacaaaagattttccaagtatttggtcttaaagattattttcgacaaagttcgtctctcataatacaactt 19060721  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||    
T  19060720 taaaataattgagacaattgaaccaaaaccaagaaaataaactcta-gccctcgactatgtatacactt 19060653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 42 - 214
Target Start/End: Complemental strand, 40040289 - 40040117
Alignment:
Q  42 tcaaatatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattaca 141  Q
    |||||||||| |||||||||||| | |||||||||||||| |||||| ||||||||| ||||||| ||||| | |||||||||||||||||||| |||||    
T  40040289 tcaaatatctccatataatcataaccaactatccacaaaatatttgccaagtatttgatcttaaatattatgtccgacaaagttcgtctctcattttaca 40040190  T
Q  142 actttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  40040189 actttaaaacaattgagacaaatgaaccaaaaccaagtaaataaattctagggcctcgactatgtatatactt 40040117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 25105135 - 25104972
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    |||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||    
T  25105135 atatctccatataatcataacaaactatccacaaaagatttgccaagtatttggtcttaaggattcttttcgacaaagttcatctctcattttacaactt 25105036  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtata 209  Q
    ||||  ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  25105035 taaagcaattgagacaaatgaaccaaatccaaggaaataaactctagggcctcgactatgtata 25104972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 8603729 - 8603899
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaa-gatttgctaagtatttggtcttaaagattatttt-cgacaaagttcgtctctcatattacaac 143  Q
    ||||||||| |||||||||||||||||||||||||| ||||||| ||| | |||| |||||| |||||||| |||||||||||||||||||| |||||||    
T  8603729 atatcttcacataatcatatcaaactatccacaaaaagatttgcaaagcaattggccttaaaaattatttttcgacaaagttcgtctctcattttacaac 8603828  T
Q  144 tttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  8603829 tttaaaataattgagacaaatgaaccaaaaccaagtatataaactctagggcctcgactatgtatacactt 8603899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 214
Target Start/End: Complemental strand, 37917540 - 37917368
Alignment:
Q  42 tcaaatatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattaca 141  Q
    |||||||| | |||||||||||| | ||||||||||||||||||||| ||||||||||||| ||||||||| | ||| |||||||||||||||| |||||    
T  37917540 tcaaatatgtccatataatcataaccaactatccacaaaagatttgccaagtatttggtctgaaagattatgtccgataaagttcgtctctcattttaca 37917441  T
Q  142 actttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||||| | |||||| ||||||||||||| ||||    
T  37917440 actttaaaacaattgagacaaatgaacaaaaaccaagtaaataaattatagggcttcgactatgtatatactt 37917368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 15549573 - 15549679
Alignment:
Q  108 attattttcgacaaagttcgtctctcatattacaactttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgta 207  Q
    ||||||| || |||||||||||||||||  ||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||    
T  15549573 attatttccggcaaagttcgtctctcattctacaactctaaaataattgagacaaatgaaccaataccaagtatataaactctagggcctcgactatgta 15549672  T
Q  208 taaactt 214  Q
    || ||||    
T  15549673 tacactt 15549679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 18738909 - 18739009
Alignment:
Q  112 ttttcgacaaagttcgtctctcatattacaactttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaa 211  Q
    ||||||| |||||||||||||| | |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |    
T  18738909 ttttcgataaagttcgtctctccttttacaactttaaaacaat-gagacaaatgaaccaaaaccaagtaaataaactcta-ggcctcgactatgtataca 18739006  T
Q  212 ctt 214  Q
    |||    
T  18739007 ctt 18739009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 17392452 - 17392535
Alignment:
Q  48 atcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctc 131  Q
    ||||||||||| | |||||||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||||||||    
T  17392452 atcttcatatatttatatcaaactatccgcaaaagattttccaagtatttgatcttaaagattattttcgacaaagttcgtctc 17392535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 121 - 209
Target Start/End: Complemental strand, 13327656 - 13327569
Alignment:
Q  121 aagttcgtctctcatattacaactttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtata 209  Q
    |||| |||||||| | |||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||    
T  13327656 aagtccgtctctccttttacaactttaaaacaat-gagacaattgaaccaaaactaagtacataaactctaggacctcgaccatgtata 13327569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 11883367 - 11883276
Alignment:
Q  112 ttttcgacaaagttcgtctctcatattacaactttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatg 205  Q
    ||||||| |||||  ||||||||| |||||||||||||| ||| ||||||||||||||||| | ||||| ||||||||||||| ||||||||||    
T  11883367 ttttcgataaagtctgtctctcattttacaactttaaaacaat-gagacaattgaaccaaa-ctaagtatataaactctagggtctcgactatg 11883276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 17937567 - 17937635
Alignment:
Q  139 acaactttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtata 209  Q
    |||||||||||| ||| |||||||||| |||||||| || ||||||||||||| ||||||||||| |||||    
T  17937567 acaactttaaaacaat-gagacaattgcaccaaaactaaataaataaactcta-ggcctcgactacgtata 17937635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 12918128 - 12918084
Alignment:
Q  42 tcaaatatcttcatataatcatatcaaactatccacaaaagattt 86  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||    
T  12918128 tcaaatatctccatataatcatatcatattatccacaaaagattt 12918084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 45804142 - 45804098
Alignment:
Q  42 tcaaatatcttcatataatcatatcaaactatccacaaaagattt 86  Q
    |||||||||| ||||||||||||||||  ||||||||||||||||    
T  45804142 tcaaatatctccatataatcatatcaatttatccacaaaagattt 45804098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 51962236 - 51962165
Alignment:
Q  137 ttacaactttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtata 209  Q
    |||||||||||||| ||| ||||||||||||| |||||  |||| |||||||||||| |||| || |||||||    
T  51962236 ttacaactttaaaacaat-gagacaattgaactaaaactgagtatataaactctaggacctcaaccatgtata 51962165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 38376870 - 38376831
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatt 85  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  38376870 atatcttcatataatgatatcaaactattcacaaaagatt 38376831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 5182 - 5016
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    |||||||||||||||||   ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  5182 atatcttcatataatcaa--caaactatccacaaaagatttgtcaagtatttggtcttaaagattattttcgacaaagttcgtctctcattttaaaactt 5085  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  5084 taaaataattgagacaaatgaaccaaaatcaagtaaataaactctagggcctcgactatatatacactt 5016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 45 - 209
Target Start/End: Complemental strand, 4436 - 4272
Alignment:
Q  45 aatatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaact 144  Q
    |||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||  |||||||    
T  4436 aatatcttcatataatcatatcaaactatctacaatagatttgccaagtatttcgtcttaaagattattttcgacaaagttcgtctctcattctacaact 4337  T
Q  145 ttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtata 209  Q
     ||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  4336 ctaaaataattgagacaaatgaacaaaaaccaagtatataaactctagagcctcgactatgtata 4272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 35868 - 35786
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgt 128  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||    
T  35868 atatcttcatataatcatatcaaactatccacaaaagattttccaagtatttggttttaaagattattttcgacaaagttcgt 35786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 53 - 1
Alignment:
Q  45 aatatcttcatataatcatatcaaactatccacaaaagatttgctaagtattt 97  Q
    |||||||||||||||||||||||||||||| |||| |||||||| ||||||||    
T  53 aatatcttcatataatcatatcaaactatctacaatagatttgccaagtattt 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 11690 - 11856
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaa-gatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaact 144  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||||||||||   ||||||||||||||||||||||||| | ||||||||    
T  11690 atatcttcatataatcatatcaaactatccaaaaaaagatttgccaagtaattggtcttaa---ttattttcgacaaagttcgtctctcgttttacaact 11786  T
Q  145 ttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  11787 ttaaaataattgagacaaatgaaccaaaaccaagtaactaaactctagggcctcgactatgtatatactt 11856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 76083 - 76249
Alignment:
Q  48 atcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaacttta 147  Q
    ||||| ||||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  76083 atctttatataatcaaaacaaactatccacaaaagatttgccaagtaattggtcttaaagattattttcgacaaggttcgtctctcattttacaacttta 76182  T
Q  148 aaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||| ||||||||| |||||||||||||||||||||| |||||||| |||||||||| ||| ||||    
T  76183 aaatagttgagacaaatgaaccaaaaccaagtaaataagctctagggtctcgactatgcatacactt 76249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 8288 - 8121
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    |||| ||||| |||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||| |||||| |||||||||||||  ||||||||    
T  8288 atatattcatgtaatcatatcaaactatccacaaaagatttgtcaagtaattggtcttaaagattatttccgacaaggttcgtctctcattctacaactt 8189  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| ||||    
T  8188 taaaataattgagacaattgaaccaaaaccaagtaaataaactata-ggcctcgacaatgtatacactt 8121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1957 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold1957
Description:

Target: scaffold1957; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 46 - 207
Target Start/End: Complemental strand, 973 - 812
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    |||||||||| |||||||| |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||  |||||||||    
T  973 atatcttcatttaatcataacaaactattcacaaaagatttgccaaatatttggtcttaaagattattttcgacaaagttcgtctttcactttacaactt 874  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgta 207  Q
    ||||||||||||||||| |||||||||||||||||||||||||  ||||||||  |||||||    
T  873 taaaataattgagacaaatgaaccaaaaccaagtaaataaactgcagggcctcatctatgta 812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0452 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0452
Description:

Target: scaffold0452; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 54 - 214
Target Start/End: Complemental strand, 8591 - 8432
Alignment:
Q  54 atataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactttaaaataa 153  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||  || |||| ||||||||| ||    
T  8591 atataatcataacaaactatccacaaaatatttgccaagtatttggtcttaaagattattttcaacaaagttcgtctcctattttacgactttaaaaaaa 8492  T
Q  154 ttgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  8491 ttgagacaaatgaacc-aaaccaagtaaatgaactctagggcctcgactatgtatacactt 8432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1278 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold1278
Description:

Target: scaffold1278; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 567 - 693
Alignment:
Q  48 atcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaacttta 147  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||| ||||||||||     
T  567 atcttcatataatcatatcaaactatccacaaaagatttgccaagtagttggtcttaaagatcattttcgacaaagttcgtctatcattttacaactttg 666  T
Q  148 aaataattgagacaattgaaccaaaac 174  Q
    ||| |||||||||||||||| ||||||    
T  667 aaacaattgagacaattgaatcaaaac 693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 68 - 194
Target Start/End: Complemental strand, 118670 - 118544
Alignment:
Q  68 aactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactttaaaataattgagacaattgaa 167  Q
    |||||| |||||||| ||||  || |||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||    
T  118670 aactattcacaaaaggtttgtaaaatatttggttttaaagatcattttcgacaaagttcgtctctcattttacaactttaaaataattgggacaaatgaa 118571  T
Q  168 ccaaaaccaagtaaataaactctaggg 194  Q
    |||||||||||||||||||||||||||    
T  118570 ccaaaaccaagtaaataaactctaggg 118544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 46 - 174
Target Start/End: Complemental strand, 14909 - 14781
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    ||||| |||||| || ||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  14909 atatcgtcatatgattatatcaaactatccacaaaagatttgtcaagtatttggtcttaaaaattattttcgacaaagttcatctctcattttacaactt 14810  T
Q  146 taaaataattgagacaattgaaccaaaac 174  Q
    ||||||||||| ||||| ||||| |||||    
T  14809 taaaataattgggacaaatgaacaaaaac 14781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 12169 - 12001
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactt 145  Q
    |||| ||||| || ||||||||| |||| |||||  ||||| | ||| ||||||||  ||||||| ||||||||||||||||| ||  || ||| || ||    
T  12169 atatattcatttattcatatcaatctatgcacaagggatttacaaagcatttggtccaaaagattgttttcgacaaagttcgtatcatattttataattt 12070  T
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  12069 taaaataattgggacaaatgaaccaaaaccaagtaaataaaatctagggcctcgactatgtatacactt 12001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 247001 - 246896
Alignment:
Q  57 taatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaactttaaaataattg 156  Q
    |||||| || || |||| |||||||||||||  |||||| | ||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||    
T  247001 taatcacataaagctattcacaaaagatttgtcaagtatcttgtcttaaagattattttcgacaaggttcgtctatcattttacaactttaaaataattg 246902  T
Q  157 agacaa 162  Q
    | ||||    
T  246901 aaacaa 246896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 7152 - 7229
Alignment:
Q  137 ttacaactttaaaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| ||||    
T  7152 ttacaacttttaaacaattgagacaattgaaccaaaaccaagtaaacaaactctagtgcctcaactatgtatacactt 7229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 7154 - 7118
Alignment:
Q  146 taaaataattgagacaattgaaccaaaaccaagtaaa 182  Q
    |||||||||||||||||||||||||||||||||||||    
T  7154 taaaataattgagacaattgaaccaaaaccaagtaaa 7118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 255456 - 255373
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtc-ttaaagattattttcgacaaagttcgt 128  Q
    ||||||||||||| ||||||||||||||||||||||||||||| | ||||||| || ||||||||||||||| |||| ||||||    
T  255456 atatcttcatatattcatatcaaactatccacaaaagatttgccatgtatttgatctttaaagattattttcaacaaggttcgt 255373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 9153 - 9317
Alignment:
Q  48 atcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgtctctcatattacaacttta 147  Q
    |||||||||||||| |||||| |||| |||||||||||||| ||||| | ||| |||||||| |||| |||| |||||||| |  | | | ||||||||     
T  9153 atcttcatataatcgtatcaagctatacacaaaagatttgcaaagtactcggttttaaagatcatttccgac-aagttcgtataacgtttcacaacttt- 9250  T
Q  148 aaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
     || |||||||||||||||| | |||| ||| ||||||| ||||| ||||| |||||||||| ||||    
T  9251 taacaattgagacaattgaatccaaactaagcaaataaattctagtgcctcaactatgtatacactt 9317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 21081 - 21016
Alignment:
Q  148 aaataattgagacaattgaaccaaaaccaagtaaataaactctagggcctcgactatgtataaactt 214  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  21081 aaataattgagacaaatgaaccaaa-ccatgtaaataaactctagggcctcgactatgtataaactt 21016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 21146 - 21081
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagatta 111  Q
    ||||||| ||||||||||| | ||||||||||||| ||||||| ||||||||||||||||||||||    
T  21146 atatctttatataatcataaccaactatccacaaatgatttgccaagtatttggtcttaaagatta 21081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 39194 - 39114
Alignment:
Q  48 atcttcatataatcatatcaaactatccacaaaagatttgctaagtatttggtcttaaagattattttcgacaaagttcgt 128  Q
    ||||||||| |||||||||||||||| || ||||||||| | | ||||| |||||||||||| ||||||||||||||||||    
T  39194 atcttcatacaatcatatcaaactattcataaaagattttcaaggtattcggtcttaaagatcattttcgacaaagttcgt 39114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 2164 - 2124
Alignment:
Q  46 atatcttcatataatcatatcaaactatccacaaaagattt 86  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  2164 atatcttcatatattcatatcaaactatccacaaaagattt 2124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University