View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4280-Insertion-60 (Length: 225)

Name: NF4280-Insertion-60
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4280-Insertion-60
NF4280-Insertion-60
[»] chr4 (6 HSPs)
chr4 (6-225)||(26827779-26827998)
chr4 (6-225)||(23448007-23448226)
chr4 (6-225)||(23875227-23875446)
chr4 (6-225)||(24298018-24298237)
chr4 (6-225)||(23423507-23423726)
chr4 (6-166)||(23446653-23446813)
[»] chr8 (1 HSPs)
chr8 (6-225)||(35961561-35961780)
[»] chr1 (1 HSPs)
chr1 (6-155)||(12165045-12165196)
[»] chr2 (5 HSPs)
chr2 (95-223)||(41257586-41257714)
chr2 (6-98)||(41244413-41244505)
chr2 (95-225)||(41244591-41244721)
chr2 (95-144)||(34614970-34615019)
chr2 (6-98)||(41257789-41257881)
[»] chr7 (2 HSPs)
chr7 (34-156)||(44071901-44072023)
chr7 (95-179)||(46584344-46584428)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 26827998 - 26827779
Alignment:
Q  6 cttcatcattcctaacagccaacaacaaatgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacctcagcagc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26827998 cttcatcattcctaacagccaacaacaaatgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacctcagcagc 26827899  T
Q  106 gaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggccgattcttccgactggg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26827898 gaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggccgattcttccgactggg 26827799  T
Q  206 aattggagtccggctctgat 225  Q
    ||||||||||||||||||||    
T  26827798 aattggagtccggctctgat 26827779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 23448007 - 23448226
Alignment:
Q  6 cttcatcattcctaacagccaacaacaaatgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacctcagcagc 105  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || || ||||| ||||| |||||||||||||||||    
T  23448007 cttcatcattcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacctcagcagc 23448106  T
Q  106 gaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggccgattcttccgactggg 205  Q
    ||| |||||||||||||| |||||||| || |||||||| ||||| ||||||||||| ||||  |||||||||| ||| |  ||||||||||| |||||     
T  23448107 gagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtatctaccgattcttcccactgga 23448206  T
Q  206 aattggagtccggctctgat 225  Q
    ||||| || |||||||||||    
T  23448207 aattgaagaccggctctgat 23448226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 23875446 - 23875227
Alignment:
Q  6 cttcatcattcctaacagccaacaacaaatgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacctcagcagc 105  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || || ||||| ||||| |||||||||||||||||    
T  23875446 cttcatcattcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacctcagcagc 23875347  T
Q  106 gaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggccgattcttccgactggg 205  Q
    ||| |||||||||||||| |||||||| || |||||||| ||||| ||||||||||| ||||  |||||||||| ||| |  ||||||||||| |||||     
T  23875346 gagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtatctaccgattcttcccactgga 23875247  T
Q  206 aattggagtccggctctgat 225  Q
    ||||| || |||||||||||    
T  23875246 aattgaagaccggctctgat 23875227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 24298237 - 24298018
Alignment:
Q  6 cttcatcattcctaacagccaacaacaaatgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacctcagcagc 105  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || || ||||| ||||| |||||||| ||||||||    
T  24298237 cttcatcattcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagc 24298138  T
Q  106 gaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggccgattcttccgactggg 205  Q
     || |||||||||||||| |||||||| ||||||||||| || |||||||||||||| ||||  |||||||||| ||| |  ||||||||||| |||||     
T  24298137 aagatattcaagaactgctgctaggtataccggagcacctgttccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttcccactgga 24298038  T
Q  206 aattggagtccggctctgat 225  Q
    ||||| || |||||||||||    
T  24298037 aattgaagaccggctctgat 24298018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 23423507 - 23423726
Alignment:
Q  6 cttcatcattcctaacagccaacaacaaatgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacctcagcagc 105  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || || ||||| ||||| |||||||||||||||||    
T  23423507 cttcatcattcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacctcagcagc 23423606  T
Q  106 gaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggccgattcttccgactggg 205  Q
    ||| |||||||||||||| |||||||| || |||||||| ||||| ||||||||||| ||||  |||||||||| ||| |  ||||||||||| || ||     
T  23423607 gagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaaccgga 23423706  T
Q  206 aattggagtccggctctgat 225  Q
    ||||| || || ||||||||    
T  23423707 aattgaagaccagctctgat 23423726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 6 - 166
Target Start/End: Original strand, 23446653 - 23446813
Alignment:
Q  6 cttcatcattcctaacagccaacaacaaatgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacctcagcagc 105  Q
    ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||| |||||||| ||||||||    
T  23446653 cttcatcattcataacagcaaacaacaaatgccttggaataattctattcttcttgttatcacgagctgcatttccagccaactcaagaacttcagcagc 23446752  T
Q  106 gaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatat 166  Q
     || |||||||||||||| || ||||| || ||||||||||| ||||||||||||||||||    
T  23446753 aagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagcatat 23446813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 35961780 - 35961561
Alignment:
Q  6 cttcatcattcctaacagccaacaacaaatgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacctcagcagc 105  Q
    ||||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||||| || || |||||||||||||| ||||||||    
T  35961780 cttcatcattcctcacagccaacaacacatgccttggaataatcctattcttcttgttatcacgagcagcattaccagccaattcaagaacttcagcagc 35961681  T
Q  106 gaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggccgattcttccgactggg 205  Q
     || ||||||||||| || |||| |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||    
T  35961680 aagatattcaagaacagcggctaagtaaacaggagcaccggtgccgacacgttgagcatatcgacctttcttcaagtaacggccgattcttcccactggg 35961581  T
Q  206 aattggagtccggctctgat 225  Q
    ||||| ||||||||||||||    
T  35961580 aattgaagtccggctctgat 35961561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 6 - 155
Target Start/End: Complemental strand, 12165196 - 12165045
Alignment:
Q  6 cttcatcattcctaacagccaacaacaaatgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacctcagcagc 105  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||    
T  12165196 cttcatcgttcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgagctgcatttccagccaactcaagaacctcagcagc 12165097  T
Q  106 gaggtattca--agaactgcagctaggtaaaccggagcaccggtgccgacac 155  Q
    ||| ||||||  |||||||| |||||||| || ||||||||||| |||||||    
T  12165096 gagatattcaagagaactgctgctaggtatactggagcaccggttccgacac 12165045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 41257714 - 41257586
Alignment:
Q  95 acctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggccgattc 194  Q
    ||||||||||| || ||||||||||| ||||||| |||||| |||||||| || || ||||||||||| ||||  |||||||||| |||||| |||||||    
T  41257714 acctcagcagcaagatattcaagaacagcagctaagtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaacgaccgattc 41257615  T
Q  195 ttccgactgggaattggagtccggctctg 223  Q
    |||||||||| ||||| || || ||||||    
T  41257614 ttccgactggaaattgaagaccagctctg 41257586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 41244413 - 41244505
Alignment:
Q  6 cttcatcattcctaacagccaacaacaaatgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacct 98  Q
    ||||||||||||| || ||||||||||  ||||||||||| || |||||||||||||||||||| || || ||||| ||||||||||||||||    
T  41244413 cttcatcattcctcactgccaacaacacgtgccttggaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaagaacct 41244505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 41244591 - 41244721
Alignment:
Q  95 acctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggccgattc 194  Q
    ||||||||||| || ||||||||||| || || |||||||| |||||||| || || ||||||||||| ||||  |||||||||| ||| || |||||||    
T  41244591 acctcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaccgaccgattc 41244690  T
Q  195 ttccgactgggaattggagtccggctctgat 225  Q
    |||| ||||| ||||| || || ||||||||    
T  41244691 ttccaactggaaattgaagaccagctctgat 41244721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 34615019 - 34614970
Alignment:
Q  95 acctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcacc 144  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  34615019 acctcagcagcgagatattcaagaacagcagctaggtaaacaggagcacc 34614970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 41257881 - 41257789
Alignment:
Q  6 cttcatcattcctaacagccaacaacaaatgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacct 98  Q
    ||||||| ||||| |||||||||||||  ||||| || ||||| || ||||||||||| ||||| || || ||||| ||||| ||||||||||    
T  41257881 cttcatcgttcctcacagccaacaacacgtgcctagggatgatcctgttcttcttgttgtcacgtgctgcatttccagccaactcaagaacct 41257789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 44071901 - 44072023
Alignment:
Q  34 atgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacctcagcagcgaggtattcaagaactgcagctaggtaa 133  Q
    |||||||||||  |||| |||||||||||| || |  |||||||| || |||||||| | ||||||||||||||| || ||||| || ||||  |||||     
T  44071901 atgccttggaacaattcgattcttcttgttgtccctggcagcgttaccagccaattccaaaacctcagcagcgagatactcaagtacggcagagaggtag 44072000  T
Q  134 accggagcaccggtgccgacacg 156  Q
    ||||||||||||| |||||||||    
T  44072001 accggagcaccggcgccgacacg 44072023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 46584428 - 46584344
Alignment:
Q  95 acctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttca 179  Q
    ||||| || ||||| ||||| ||||| || || ||||| | ||||||||||||||| |||||||||| ||| |||||||||||||    
T  46584428 acctcggcggcgagatattcgagaacggcggcgaggtagatcggagcaccggtgccaacacgctgagaatagcgacctttcttca 46584344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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