View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280_high_12 (Length: 314)
Name: NF4280_high_12
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 56044969 - 56045276
Alignment:
| Q |
1 |
tctctaatgtttctctggctgtataattgacaacaaataggcaaggatagaatcttaaccaaaagaacttatgcaacagtgaaaactatttttcttagtc |
100 |
Q |
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| T |
56044969 |
tctctaatgtttctctggctgtataattgacaacaaataggcaaggatagaatcttaaccaaaagaacttatgcaacagtgaaaactaattttcttagtc |
56045068 |
T |
|
| Q |
101 |
aaagttaattttttgcttgtttattactctattctctaatatgattttgattacatcattaaccttatgctacagggcactccatgaaaaagagaataaa |
200 |
Q |
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| T |
56045069 |
aaagttacttttttgcttgtttattactctattctctaatatgattttgattacatcattaaccttatgctacagggcactccatgaaaaagagaataaa |
56045168 |
T |
|
| Q |
201 |
gcatcaaaaggctttacaaggatgcagtttttcctcattgctatgggtgttagcttcttgtattatgcactccccggctatcttttcactgtcttaacat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
56045169 |
gcatcaaaaggctttacaaggatgcagtttttcctcattgctatgggtgttagcttcttgtattatgcactccccggctatcttttcaccgtcttaacat |
56045268 |
T |
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| Q |
301 |
tcttctca |
308 |
Q |
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|||||||| |
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| T |
56045269 |
tcttctca |
56045276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 7 - 308
Target Start/End: Original strand, 55706481 - 55706780
Alignment:
| Q |
7 |
atgtttctctggctgtataattgacaacaaataggcaaggatagaatcttaaccaaaagaacttatgcaacagtgaaaactatttttcttagtcaaagtt |
106 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | |||||| ||||| | ||||||||| ||||||| |
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| T |
55706481 |
atgtttctttggctgtataattgacaacaaataggcaaggatatcatcttaatcaaaagaacttaagaaacagtaaaaaccaattttcttagccaaagtt |
55706580 |
T |
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| Q |
107 |
aattttttg-cttgtttattactctattctctaatatgattttgattacatcattaaccttatgctacagggcactccatgaaaaagagaataaagcatc |
205 |
Q |
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| T |
55706581 |
acttttttttcctgtttattactacattctctaatgttagtttgattacagcactaaccttatgctaaagaacactccatgaaaaagagaataaa---ta |
55706677 |
T |
|
| Q |
206 |
aaaaggctttacaaggatgcagtttttcctcattgctatgggtgttagcttcttgtattatgcactccccggctatcttttcactgtcttaacattcttc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
55706678 |
aaaaggctttacaaggatgcagtttttcctcattgccatgggtgttagcttcttgtattatgcactccctggctatcttttcaccatcttaacattcttc |
55706777 |
T |
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