View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280_high_18 (Length: 272)
Name: NF4280_high_18
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 8019349 - 8019513
Alignment:
| Q |
65 |
catccaatatttgcctccctttaacgatcgacaatcaacttcaatctggttgctacaagtttcgacaacactttgtgcatataccagaccagtgatatca |
164 |
Q |
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| T |
8019349 |
catccaatatttgcctccctttaacgatcgacaatcaacttcaatctggttgctacaactttcgacaacactttgtgcatatgccagactagtgatatta |
8019448 |
T |
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| Q |
165 |
gcctaaaatcatacaattgttaaggactaacaactttcataatcatatgcaattagttaaaacct |
229 |
Q |
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| T |
8019449 |
gcctaaaatcatacaatcgttaaggactaacaactttcataatcatatgcaattagttaaaacct |
8019513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 8019265 - 8019325
Alignment:
| Q |
11 |
acatcatcgtccatcttctccataagactacgaaattcattttggacatgaccacatccaa |
71 |
Q |
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| T |
8019265 |
acatcatagtccatcttctccataagactacgaaattcattttggacatgaccacatccaa |
8019325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 12217309 - 12217277
Alignment:
| Q |
222 |
taaaacctattacagttagttaaaactaactac |
254 |
Q |
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| T |
12217309 |
taaaacctattacagttagttacaactaactac |
12217277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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