View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280_high_21 (Length: 254)
Name: NF4280_high_21
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 44155362 - 44155591
Alignment:
| Q |
1 |
ctatcgctgcattaagtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggagga |
100 |
Q |
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| T |
44155362 |
ctatcgctgcattaagtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggagga |
44155461 |
T |
|
| Q |
101 |
aggagcagagtttttctattgaagccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagtt |
200 |
Q |
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| T |
44155462 |
aggagcagagtt------------ccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagtt |
44155549 |
T |
|
| Q |
201 |
ttttgaaaagaatgcgatcatcagataagtgcagttcatctc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44155550 |
ttttgaaaagaatgcgatcatcagataagtgcagtttatctc |
44155591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 6 - 134
Target Start/End: Complemental strand, 40894457 - 40894330
Alignment:
| Q |
6 |
gctgcattaagtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggag |
105 |
Q |
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| T |
40894457 |
gctgcattaagtgtttatgcttttatgtggccaatatttctagtcatgcttcttaatagttttactctca--ctgatttgcaggtgcctggaggaaggag |
40894360 |
T |
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| Q |
106 |
caga-gtttttctattgaagccagtcaagt |
134 |
Q |
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| T |
40894359 |
cagaggtttttctattgaagccagtcaagt |
40894330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 44214434 - 44214638
Alignment:
| Q |
21 |
tatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagt-ttttctat |
119 |
Q |
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|||||| ||| |||||| |||| || |||||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||| |||| | | |
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| T |
44214434 |
tatgctattaggtggccagtatatcctgtcctgcttcttaatagttttattttcacta--atttgcaggtgtttggaggaaggagcagaggattttttgt |
44214531 |
T |
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| Q |
120 |
tgaagccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatc |
219 |
Q |
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| ||||||||||| ||||||| ||| | || ||||||| ||||||||||||||||||||||| | ||| ||| || ||| | | |||||||||||||| |
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| T |
44214532 |
taaagccagtcaaattgtcagatgtaagacgcctgaaagatttcatcatgagaggtgaagtgaaggatggcgagaaatgttctctcaaaagaatgcgatc |
44214631 |
T |
|
| Q |
220 |
atcagat |
226 |
Q |
| |
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||||||| |
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| T |
44214632 |
atcagat |
44214638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 40894326 - 40894279
Alignment:
| Q |
153 |
tgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagtt |
200 |
Q |
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||||||| |||||||||||||||||||| |||| ||||||| |||||| |
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| T |
40894326 |
tgaaagatttcatcatgagaggtgaagtaaaagatggtgagaaaagtt |
40894279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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