View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280_high_5 (Length: 469)
Name: NF4280_high_5
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 21 - 460
Target Start/End: Original strand, 41086830 - 41087270
Alignment:
| Q |
21 |
tgtgtattttatttagttggggtgctagcctgtttttctttatgatagttagtctcattcttagtttcagtatcagcttgagtcttgttaggagtcaggt |
120 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41086830 |
tgtgtattttgtttacttggggtgctagcctgtttttctttatgatagttagtctcattcttagtttcagtatcagcttgagtcttgttaggagtcaggt |
41086929 |
T |
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| Q |
121 |
ccagtagttggtattctggatttctggtggtgtgtgcttagttttgacattttgagatctattgtaattttattgtgttgtccgattgtccaacacatga |
220 |
Q |
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| T |
41086930 |
ccggtggttggtattctggatttctggtggtgtgtgcttagttttgacattttgagatctattgtaattttattgtgttgtccgattgtccaacacatga |
41087029 |
T |
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| Q |
221 |
tagtgtaggtcctctgcaaccttcatagaaggtgggtagagtatgactgcgttaatgctgctgcatcaaacacttctattaataaaatttctctaattat |
320 |
Q |
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| T |
41087030 |
tagtgtaggtcctctgcaaccttcatagaaggtgggtagagtatgactgcgttaatgctgctgcatcaaacacttctattaataaaatttctctaattat |
41087129 |
T |
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| Q |
321 |
cagaaagagnnnnnnnnnnnnnngagtgaacacgaaaagttaatttgcgatcaggtacttaattttgttgacaaataaaatcttacaaatgcctagcaaa |
420 |
Q |
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| T |
41087130 |
cagaaagaaaaaaagaaaaaaaagagtgaacacgaaaagttaacttgcgatcgggtacttaattttgttgacaaataaaatcttaccaatgcctagcaaa |
41087229 |
T |
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| Q |
421 |
tgatgatttat-aaattgtggttttattttatcagtataat |
460 |
Q |
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| T |
41087230 |
tgatgatttatgaaattttggttttattttatcagtataat |
41087270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 41075349 - 41075568
Alignment:
| Q |
21 |
tgtgtattttatttagttggggtgctagcctgtttttctttatgatagttagtctcattcttagtttcagtatcagcttgagtcttgttaggagtcaggt |
120 |
Q |
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|||||||||| ||||| ||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41075349 |
tgtgtattttgtttagatggggtgttagcctgtgtttctttacgatagttagtctcattcttagtttcagtatcagcttgagtcttgttaggagttaggt |
41075448 |
T |
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| Q |
121 |
ccagtagttggtattctggatttctggtggtgtgtgcttagttttgacattttgagatctattgtaattttattgtgt---tgtccgattgtccaacaca |
217 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | |||| ||| | |||||||||| |||||| |
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| T |
41075449 |
ccaatagttggtattctggatttctggtggtgtgtgcttagttttgacatt--gagatctgctgtaactgtattttgtgattatccgattgtctaacaca |
41075546 |
T |
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| Q |
218 |
tgatagtgtaggtcctctgcaa |
239 |
Q |
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|||||| ||||||| ||||||| |
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| T |
41075547 |
tgatagagtaggtcgtctgcaa |
41075568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 456
Target Start/End: Complemental strand, 50191146 - 50191088
Alignment:
| Q |
399 |
aatcttacaaatgcctagcaaatgatgatttat-aaattgtggttttattttatcagta |
456 |
Q |
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| T |
50191146 |
aatcttacaaatgcccagcaaatggtgatttgtgaaattgtgattttattttatcagta |
50191088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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