View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4280_high_7 (Length: 381)

Name: NF4280_high_7
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4280_high_7
NF4280_high_7
[»] chr1 (2 HSPs)
chr1 (142-365)||(28028784-28029007)
chr1 (9-82)||(28028651-28028724)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 142 - 365
Target Start/End: Original strand, 28028784 - 28029007
Alignment:
Q  142 taaataacatcaaacttttccattagttgtgaccttcaagtgtaacacttgagtgtcatttaagtgttgaagaagtgctgattttagtcatagcctgtaa 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28028784 taaataacatcaaacttttccattagttgtgaccttcaagtgtaacacttgagtgtcatttaagtgttgaagaagtgctgattttagtcatagccggtaa 28028883  T
Q  242 acaataattcttaaatagaacaccagatgaggaataggtgttagtaccagaaatgtgtccagcactccacttacagaagtgtttgttttcataggccatg 341  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28028884 acagtaattcttaaatagaacaccagatgaggagtaggtgttagtaccagaaatgtgtccagcactccacttacagaagtgtttgttttcataggccatg 28028983  T
Q  342 acaattgacaaccatggaccatca 365  Q
    |||||||||||||| |||||||||    
T  28028984 acaattgacaaccacggaccatca 28029007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 28028651 - 28028724
Alignment:
Q  9 gagaagaaaaatgaatttgagcaaataaagatggataactctaatacagccaaggttgaataagtgtacttaac 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28028651 gagaagaaaaatgaatttgagcaaataaagatggataactctaatacagccaaggttgaataagtgtacttaac 28028724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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