View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280_low_1 (Length: 768)
Name: NF4280_low_1
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 19 - 580
Target Start/End: Original strand, 4859215 - 4859774
Alignment:
| Q |
19 |
tgttaatcatatcataactcataaggatgtaaataatggtaacaaatactaacaagtgcttttcaaagacaaaatttccaatacttgtgttcgtgatgcc |
118 |
Q |
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| T |
4859215 |
tgttaatcatatcataactcataaggatgtaaataatggtaacaaatgctaacaagtgcttttcaa-gacaaaatttctaatacttgtgttcgtgatgcc |
4859313 |
T |
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| Q |
119 |
aatggtagttaaagtttttaaatgcaaaccacatctaatactacttcaccctagtatttgtcccaacaaaaaacaaaggttgattttgatatcactggtt |
218 |
Q |
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| T |
4859314 |
aatggtagttaaagtttttaaatgcaaaccacatctaacactacttcaccctagtatttgtcccaacaaaaaacaaaggttgattttgatatcactggtt |
4859413 |
T |
|
| Q |
219 |
ggttgatagcaacctgactgagaaatatcaattgctgtaacttgtaaggtaaagaggtgctgctgccactgccctagcctgcatgcatgtttggatatta |
318 |
Q |
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| T |
4859414 |
ggttgatagcaacctgactgagaaatatcaattgctgtaacttgtaaggtaaagaggtgctgctgccactgccctagcctgcatgcatgtttggatatta |
4859513 |
T |
|
| Q |
319 |
gaattcaaatgcctctcatgtcatgcaaattggtttcctcttttattctcatactctctctcctcattatgtccccttcctttgttgcaaaactactgga |
418 |
Q |
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| T |
4859514 |
gaattgaaatgcctctcatgtcatgcaaattggtttcctcttttattctcatactctctctcctcattatgtccccttcctttgttgcaaaactactgga |
4859613 |
T |
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| Q |
419 |
tcttcaactcaaaattcaattccttccaattacactaccactatatattttctagtctctctgagtcattagaccccggtaatgaaatgtcaatatccaa |
518 |
Q |
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| T |
4859614 |
tctccaactcaaaattcaattccttccaattacactaacactatatattttctagtctctctgagtcatgagaccccggtaatgaaatgtcaatatccaa |
4859713 |
T |
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| Q |
519 |
gcttttgtatgtcctgtcacggtcaccttagattcttactcttttggcttatcaaggtaata |
580 |
Q |
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| T |
4859714 |
gc-tttgtatgtcctgtcacggtcaccttagattcttactcttttggcttatcaaggtaata |
4859774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 630 - 767
Target Start/End: Original strand, 4859824 - 4859960
Alignment:
| Q |
630 |
gtgaaacaacttggtacgttatttctgctctttattaatcttttatctgtgccttctggttttagtaccttatcacaaatgtccccatagaagatagatt |
729 |
Q |
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| T |
4859824 |
gtgagacaacttggtacgttatttctgctctttattaatcttttatttgtaccttctggttttagtaccttatcacaaatgt-cccatagaagataagtt |
4859922 |
T |
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| Q |
730 |
aaaaaattatatttaaatgttttatattcttcgacatc |
767 |
Q |
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| T |
4859923 |
aaaaaattatatttaaatgttttatattattcaacatc |
4859960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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