View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4280_low_12 (Length: 318)

Name: NF4280_low_12
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4280_low_12
NF4280_low_12
[»] chr2 (4 HSPs)
chr2 (16-318)||(4568739-4569065)
chr2 (16-97)||(38576960-38577041)
chr2 (10-145)||(16863381-16863514)
chr2 (10-107)||(2248953-2249050)
[»] chr1 (5 HSPs)
chr1 (39-107)||(45136764-45136832)
chr1 (60-115)||(67712-67767)
chr1 (10-51)||(7749020-7749061)
chr1 (25-99)||(34601641-34601715)
chr1 (16-89)||(15321020-15321093)
[»] chr7 (2 HSPs)
chr7 (57-106)||(8448076-8448125)
chr7 (77-122)||(758029-758074)
[»] chr5 (1 HSPs)
chr5 (16-121)||(972776-972881)
[»] chr3 (3 HSPs)
chr3 (16-101)||(54437604-54437689)
chr3 (86-145)||(46303294-46303353)
chr3 (15-107)||(7641809-7641901)
[»] chr8 (1 HSPs)
chr8 (39-107)||(39280914-39280982)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 4569065 - 4568739
Alignment:
Q  16 atgaagaaatttgatgttcttaggatgaaaataataactcg-ttataataatagagatgaagaaaatgagttttttctttgataggggtaaatcacctcc 114  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  4569065 atgaagaaatttgatgtttttaggatgaaaataataactcggttataataatagagatgaagaaaatgagttttttctttgataggtataaatcacctcc 4568966  T
Q  115 aattcatccaagagtaatgtagaaaaaacctt-----------------caattggcgatatatttagggacaaagaataaatagtatttaaattta--- 194  Q
    ||||||||||||| ||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||       
T  4568965 aattcatccaagactaatgtagaaaaaaccttaatttttagaggttattcaattggcgatatatttagggacaaagaataaatagtatttaaatttaaat 4568866  T
Q  195 ---cgtgatgacatgatgtctgctctaaccatggtaattgctactacagggtaaaggcctcaaaagtggaggataatgtgaaggtgaagtttgcatactc 291  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4568865 ttacgtgatgacatgatgtctgctctaaccatggtaattgctactacagggtaaaggcctcaaaagtggaggataatgagaaggtgaagtttgcatactc 4568766  T
Q  292 aatcaatatacgtagactagtaaagcc 318  Q
    |||||||||||||||||||||||||||    
T  4568765 aatcaatatacgtagactagtaaagcc 4568739  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 38576960 - 38577041
Alignment:
Q  16 atgaagaaatttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgat 97  Q
    |||||||| ||| ||||||||  |||||||||  |||||  |||||| |||| | |||||||||||||| ||||||||||||    
T  38576960 atgaagaactttaatgttctttagatgaaaatggtaactgattataaaaataaatatgaagaaaatgagatttttctttgat 38577041  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 16863514 - 16863381
Alignment:
Q  10 aagaaaatgaagaaatttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggggtaaatca 109  Q
    ||||| |||||||||||||||||||||  |||||||||  |||||  || ||| |||| ||| |||||||| |   ||||||||||||| || ||||| |    
T  16863514 aagaagatgaagaaatttgatgttcttgagatgaaaatggtaactgattgtaagaataaaga-gaagaaaaaggaatttttctttgatatggataaatta 16863416  T
Q  110 cctccaattcatccaagagtaatgtagaaaaaacct 145  Q
    || |||||||||    | ||||||||||||||||||    
T  16863415 cc-ccaattcatggtggggtaatgtagaaaaaacct 16863381  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 2248953 - 2249050
Alignment:
Q  10 aagaaaatgaagaaatttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggggtaaat 107  Q
    ||||| |||||||| ||| ||||| ||  |||||||||  |||||  || ||| |||| |||||||||||||  | |||||||||||||| |||||||    
T  2248953 aagaagatgaagaagtttaatgtttttgagatgaaaatggtaactaattctaagaataaagatgaagaaaatatgatttttctttgatagaggtaaat 2249050  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 45136764 - 45136832
Alignment:
Q  39 gatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggggtaaat 107  Q
    ||||||||||||||||  || ||| |||| |||||||||||||||| ||||||||||||||||||||||    
T  45136764 gatgaaaataataactgattgtaagaataaagatgaagaaaatgagatttttctttgataggggtaaat 45136832  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 67767 - 67712
Alignment:
Q  60 taataatagagatgaagaaaatgagttttttctttgataggggtaaatcacctcca 115  Q
    |||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  67767 taataataaagatgaagaaaatgagtcttttctttgatagaggtaaattacctcca 67712  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 7749061 - 7749020
Alignment:
Q  10 aagaaaatgaagaaatttgatgttcttaggatgaaaataata 51  Q
    |||||||||||||||||||||||||||  |||||||||||||    
T  7749061 aagaaaatgaagaaatttgatgttcttgagatgaaaataata 7749020  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 34601641 - 34601715
Alignment:
Q  25 tttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgatag 99  Q
    ||||||||| ||  ||||||||||||||||  |  ||| |||| |||||||||||||||| ||||||||| ||||    
T  34601641 tttgatgtttttgagatgaaaataataactaatcgtaagaataaagatgaagaaaatgagatttttcttttatag 34601715  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 15321093 - 15321020
Alignment:
Q  16 atgaagaaatttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttt 89  Q
    ||||| |||||| ||||| ||  || |||||| | |||||||| |||||||  |||||||||||||||||||||    
T  15321093 atgaaaaaatttaatgtttttgagaagaaaatgacaactcgttgtaataattaagatgaagaaaatgagttttt 15321020  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 8448076 - 8448125
Alignment:
Q  57 ttataataatagagatgaagaaaatgagttttttctttgataggggtaaa 106  Q
    |||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  8448076 ttatcataataaagatgaagaaaatgagttttttctttgataggtgtaaa 8448125  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 758029 - 758074
Alignment:
Q  77 aaaatgagttttttctttgataggggtaaatcacctccaattcatc 122  Q
    |||||||| |||||||||||||||||||||| || | |||||||||    
T  758029 aaaatgagatttttctttgataggggtaaattacatgcaattcatc 758074  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 972881 - 972776
Alignment:
Q  16 atgaagaaatttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggggtaaatcacctcca 115  Q
    |||||||| ||||||||||||  ||||||||| ||||||  || ||| |||| ||| ||| ||||||| |||||||||||| | || ||||| ||| |||    
T  972881 atgaagaagtttgatgttcttgagatgaaaatgataactaattttaaaaataaagaggaaaaaaatgaattttttctttgaaatggataaattaccccca 972782  T
Q  116 attcat 121  Q
    | ||||    
T  972781 aatcat 972776  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 54437689 - 54437604
Alignment:
Q  16 atgaagaaatttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggg 101  Q
    |||||||| ||| ||||| ||  |||||||||  ||| | ||| |||||||| |||||| |||||||||||||| |||||||||||    
T  54437689 atgaagaagtttaatgttattgagatgaaaatggtaatttgttgtaataataaagatgaggaaaatgagtttttcctttgataggg 54437604  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 46303353 - 46303294
Alignment:
Q  86 tttttctttgataggggtaaatcacctccaattcatccaagagtaatgtagaaaaaacct 145  Q
    ||||||||||||||| |||||| ||  |||||||||| | || |||||||||||||||||    
T  46303353 tttttctttgataggagtaaattactcccaattcatcaaggaataatgtagaaaaaacct 46303294  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 7641901 - 7641809
Alignment:
Q  15 aatgaagaaatttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggggtaaat 107  Q
    |||||| || ||||||||||||   || ||||| ||||||  || ||| |||| || ||||||||||||   |||||||||||||||||||||    
T  7641901 aatgaaaaagtttgatgttcttgatataaaaatgataactgattttaagaataaagttgaagaaaatgaaaattttctttgataggggtaaat 7641809  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 39280982 - 39280914
Alignment:
Q  39 gatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggggtaaat 107  Q
    |||||||||  |||||  || ||| |||| |||||||||||| | | ||||||||||||||||||||||    
T  39280982 gatgaaaatggtaactgattttaagaataaagatgaagaaaaggggatttttctttgataggggtaaat 39280914  T

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