View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280_low_16 (Length: 297)
Name: NF4280_low_16
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 35926480 - 35926344
Alignment:
| Q |
80 |
ctagaatcaattttataacttttgtatcaatttcaacaaatataatcaaaatccaatgtttttaaacctgaaaagaaatccagaattcaattacaacaaa |
179 |
Q |
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| T |
35926480 |
ctagaatcaattttataacttttgtatcaatttcaacaaatataatcaaaatccaatgtttttaaaccttaaaaaaaaaccagaattcagtgacaacaaa |
35926381 |
T |
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| Q |
180 |
tatatcaaa-ggagtaacatttcatgaatttcttgtt |
215 |
Q |
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| T |
35926380 |
tatatcaaagggggtagcttttcatgactttcttgtt |
35926344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 35926226 - 35926151
Alignment:
| Q |
208 |
ttcttgttcttgacaccaacatattacgaattagtgagtaaacaggtttagggtaattgagaattttggtggtaat |
283 |
Q |
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| T |
35926226 |
ttcttgttcttgacaccaacatagtacaaaatagtgagtaaacaggtttagggtaattgggaattttggtggtaat |
35926151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 35926605 - 35926536
Alignment:
| Q |
16 |
ataaacaacatca---tgagaaagaagagttcagatctttcaagatcaaagaagtataaaatgatatcta |
82 |
Q |
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| T |
35926605 |
ataaacaacatcagaatgagaaagaagagttcagatcttttcaaatcggagaagtataaaaggatatcta |
35926536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 38664063 - 38664171
Alignment:
| Q |
80 |
ctagaatcaattttataacttttgtatcaatttcaacaaatataatcaaaatccaatgtttttaaacctg-aaaagaaatccagaattcaattacaacaa |
178 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| | ||||||| |||| ||| |
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| T |
38664063 |
ctagaaccaattttataacttttgtatcaatttcaacaaatataatcaaaatccaatttttttaaacctgtaaaaaaaataccaaattcaactacagcaa |
38664162 |
T |
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| Q |
179 |
atatatcaa |
187 |
Q |
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||||||||| |
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| T |
38664163 |
atatatcaa |
38664171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 38664337 - 38664404
Alignment:
| Q |
208 |
ttcttgttcttgacaccaacatattacgaattagtgagtaaacaggtttag-ggtaattgagaatttt |
274 |
Q |
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| T |
38664337 |
ttcttgttcttgacaccaacatattacgaaatagtgaggaaacaggtttagtggtacttgggaatttt |
38664404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 17690300 - 17690344
Alignment:
| Q |
91 |
tttataacttttgtatcaatttcaacaaatataatcaaaatccaat |
136 |
Q |
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| T |
17690300 |
tttataacttttg-atcaatttcaacaaatctaatcaaaacccaat |
17690344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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