View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280_low_17 (Length: 296)
Name: NF4280_low_17
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 7153629 - 7153346
Alignment:
| Q |
1 |
accaatgtgtgtatttgtgtgtatgagtacacatttaatgtataagaaacatgtgtgtttgctttttaattagaataatataaagtggtcatagatctca |
100 |
Q |
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| T |
7153629 |
accaatgtgtgtatttgtgtgtatgagtacacatttaatgtataagaaacatgtgtgtttgctttttaattagaataatataaagtggtcatagatctca |
7153530 |
T |
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| Q |
101 |
tcttcagaaaattgaaatgttagat----tttgttgaaggtgttatgagagctatatggttgctttgtgtttggttgtattgt----actagagtcaata |
192 |
Q |
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| T |
7153529 |
tcttcagaaaattgaaatgttagatttaatttgttgaaggtgttatgagagctatatggttgctttgtgtttggttgtattgtataaactatagtcaata |
7153430 |
T |
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| Q |
193 |
taagtcataaatctctgcttattactaattctacaagtatttatccaagaaatagaatgtatattgtgagactcatgagtatcc |
276 |
Q |
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| T |
7153429 |
taagtcataaatctctgcttattactaactctacaagtatttatccaagaaatagaatgtatcttgtgagactcatgagtatcc |
7153346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 7159725 - 7159548
Alignment:
| Q |
1 |
accaatgtgtgtatttgtgtgtatg--agtacacatttaatgtataagaaacatgtgtgtttgctttttaattagaataatataaagtggtcatagatct |
98 |
Q |
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|||||| |||||| |||||||||| |||||||||||||| |||||||| ||||||| || |||||| ||||||||||| | |||||||| ||||| |
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| T |
7159725 |
accaatatgtgtaattgtgtgtatattagtacacatttaatatataagaagcatgtgt--ttccttttt---tagaataatatgaggtggtcatggatct |
7159631 |
T |
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| Q |
99 |
catcttcagaaaattgaaatgtt---agattttgttgaaggtgttatgagagctatatggttgctttgtgtttggttgtattgta |
180 |
Q |
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| T |
7159630 |
aaccttcatcaaattcaaatgttcttagattttgttgaaggtgttatgagagc--tatgatcgctttgtgtttggttgtcttgta |
7159548 |
T |
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