View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4280_low_25 (Length: 239)

Name: NF4280_low_25
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4280_low_25
NF4280_low_25
[»] chr4 (6 HSPs)
chr4 (18-227)||(28033550-28033757)
chr4 (18-227)||(7103785-7103997)
chr4 (18-185)||(40756497-40756664)
chr4 (18-186)||(7109098-7109266)
chr4 (33-227)||(44527404-44527601)
chr4 (18-67)||(2059073-2059122)
[»] chr8 (7 HSPs)
chr8 (18-222)||(9492633-9492840)
chr8 (18-186)||(19237544-19237712)
chr8 (18-186)||(19310728-19310896)
chr8 (20-227)||(16435768-16435978)
chr8 (18-227)||(8970072-8970284)
chr8 (18-186)||(38311885-38312056)
chr8 (18-227)||(2537839-2538055)
[»] chr1 (5 HSPs)
chr1 (25-227)||(43542193-43542398)
chr1 (18-186)||(31438540-31438708)
chr1 (159-227)||(9438525-9438596)
chr1 (18-52)||(15262473-15262507)
chr1 (18-67)||(32675484-32675533)
[»] chr3 (4 HSPs)
chr3 (18-176)||(19624947-19625105)
chr3 (18-183)||(19646085-19646250)
chr3 (18-227)||(1661441-1661653)
chr3 (132-186)||(8085908-8085962)
[»] chr7 (5 HSPs)
chr7 (30-227)||(25616423-25616623)
chr7 (18-186)||(11790645-11790813)
chr7 (18-121)||(9112002-9112105)
chr7 (17-66)||(14069159-14069208)
chr7 (17-66)||(14379187-14379236)
[»] chr5 (6 HSPs)
chr5 (31-186)||(16055037-16055193)
chr5 (18-154)||(32401805-32401941)
chr5 (18-70)||(4719220-4719272)
chr5 (18-186)||(27214133-27214301)
chr5 (33-120)||(15908194-15908281)
chr5 (150-227)||(4719059-4719139)
[»] scaffold0129 (1 HSPs)
scaffold0129 (18-119)||(44804-44904)
[»] chr2 (3 HSPs)
chr2 (18-120)||(17538815-17538917)
chr2 (18-220)||(26024645-26024850)
chr2 (28-109)||(24310436-24310517)
[»] scaffold0524 (1 HSPs)
scaffold0524 (22-66)||(10022-10066)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 28033550 - 28033757
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  28033550 attggtgttgtggtgagagataatgaagatgttgtcgttgatgctagttgctgacaaatcttttcattaaaagtttcagaagttggagaagctttagcta 28033649  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttctatgttgttttgacgtaatgctcatcaacaatc 217  Q
    |||||||| ||||||||||| ||||||||  || |||||| ||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||    
T  28033650 tgcgaaacgatttaaaatttgcaaaagac--atgttttctgaatcttatatcagaatcagatgcttctatattgtcgtgacgtaatgctcatcaacaatc 28033747  T
Q  218 tcccacctat 227  Q
    || |||||||    
T  28033748 tctcacctat 28033757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 7103785 - 7103997
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||   |  || |||||||||||  |  |||||| |||| |||| | |||||||    
T  7103785 attggtgttgtggtgagagataatgaaggtgttgtcgttgatgctagttattggcaagtcttttcattaccaaattcagaggttgcagaatccttagcta 7103884  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatcaaca 214  Q
    |||| ||   |||  ||||| |||| ||||| |||||||| ||||||||| ||||||||||||||||| |||| |||||  |||  |||||||| |||||    
T  7103885 tgcggaagggtttggaatttgcaaatgacatgtcttttctgaatcttatagcagaatcagatgcttctaatgtggttttagcgttaaatgctcaccaaca 7103984  T
Q  215 atctcccacctat 227  Q
    | |||||| ||||    
T  7103985 acctcccaactat 7103997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 40756664 - 40756497
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||| | || || | |||||||||  || |||||| ||||  |||||||||||||    
T  40756664 attggtgttgtggtgagagataatgaaggtgttgtcgttggtgctagttcctgacaagtattttcattaccagattcagaggttgcggaagctttagcta 40756565  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct 185  Q
    ||   ||    ||  ||||| |||||||||| |||||||| ||||||||| || ||||||||||||||    
T  40756564 tgtagaagggattgtaatttgcaaaagacatgtcttttctgaatcttatagcaaaatcagatgcttct 40756497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 7109098 - 7109266
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||   |  || ||||||||| |  || |||||| |||| | |||   ||||||    
T  7109098 attggtgttgtggtgagagataatgaaggtgttgtcgttggtgctagttcttggcaagtcttttcatcaccagattcagaggttgcaaaagacatagcta 7109197  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttcta 186  Q
    |||  ||   ||| ||||||  ||| ||||| |||||| | ||||||||| ||||||||||||||||||    
T  7109198 tgcagaagggtttgaaatttgtaaatgacatgtcttttttgaatcttatagcagaatcagatgcttcta 7109266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 227
Target Start/End: Original strand, 44527404 - 44527601
Alignment:
Q  33 agagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagctatgcgaaacaatttaa 132  Q
    ||||||||||||| ||||||| ||| |||||| ||| || |||| ||||| |||  ||  ||| | |||| | ||||| ||| |||||| || | |||||    
T  44527404 agagataatgaagatgttgtcgttgctgctagctgctgacaaatattttctttaccagactcataggttgtaaaagctctagttatgcggaagagtttaa 44527503  T
Q  133 aatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatcaacaatctcccacctat 227  Q
    ||||| | |||||||| |||||| | ||||||||| |||||| | | |||||| |||| || ||||| |  ||||||||||||||||||  |||||||    
T  44527504 aatttgcgaaagacatgtcttttatgaatcttataacagaattacacgcttctaatgtggtattgacattgaatgctcatcaacaatctttcacctat 44527601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 2059073 - 2059122
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttg 67  Q
    ||||||||||| |||||||||||||||||||| ||| ||| |||||||||    
T  2059073 attggtgttgttgtgagagataatgaaggtgtggtcgttggtgctagttg 2059122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 9492840 - 9492633
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||| | || || |||||||||||  || |||||  |||| ||||||||||||||    
T  9492840 attggtgttgtggtgagagataatgaaagtgttgtccttgatgctagttcctgacaagtcttttcattaccagattcaggggttgtagaagctttagcta 9492741  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatcaaca 214  Q
    |||||||   ||| ||||||  ||||||| | | |||||| ||||||||| ||||||||||||||||| ||||||||||  |||  ||||||||||||||    
T  9492740 tgcgaaagggtttgaaatttgtaaaagacgtgtgttttctgaatcttatagcagaatcagatgcttctaatgttgttttagcgttgaatgctcatcaaca 9492641  T
Q  215 atctccca 222  Q
    ||||||||    
T  9492640 atctccca 9492633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 19237544 - 19237712
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    |||||||||| ||||||||||||||||||||||||| ||| ||||||||   || | || |||||||||  || |||| | |||| ||||||||||||||    
T  19237544 attggtgttgcggtgagagataatgaaggtgttgtcgttggtgctagttcatgacatatattttcattaccagattcaaaggttgcagaagctttagcta 19237643  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttcta 186  Q
    |||||||   |||  ||||| ||| |||||| |||||||| ||||||||| ||||||||| ||||||||    
T  19237644 tgcgaaagggtttggaatttgcaacagacatgtcttttctaaatcttatagcagaatcagctgcttcta 19237712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 19310728 - 19310896
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    |||||||||| ||||||||||||||||||||||||| ||| ||||||||   || | || |||||||||  || |||| | |||| ||||||||||||||    
T  19310728 attggtgttgcggtgagagataatgaaggtgttgtcgttggtgctagttcatgacatatattttcattaccagattcaaaggttgcagaagctttagcta 19310827  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttcta 186  Q
    |||||||   |||  ||||| ||| |||||| |||||||| ||||||||| ||||||||| ||||||||    
T  19310828 tgcgaaagggtttggaatttgcaacagacatgtcttttctaaatcttatagcagaatcagctgcttcta 19310896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 16435978 - 16435768
Alignment:
Q  20 tggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagctatg 119  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||| | || |   ||||||||||  |  || ||| |||| ||||| ||||||||||    
T  16435978 tggtgttgtggtgagagataatgaaggtgttgtcgttggtgctagttcctgacatggcttttcattaccaaattaagaggttgcagaagttttagctatg 16435879  T
Q  120 cgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatcaacaat 216  Q
     ||||   ||| |||||| |||||||||| |||||||| ||||||||| |||||||||||| |||| |||| |||||  |||  ||||||||  ||||||    
T  16435878 ggaaagggtttgaaatttgcaaaagacatgtcttttctgaatcttatagcagaatcagatgtttctaatgtggttttagcgttgaatgctcactaacaat 16435779  T
Q  217 ctcccacctat 227  Q
    |||||| ||||    
T  16435778 ctcccaactat 16435768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 8970072 - 8970284
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||| |    || |||||||||||   | || | | |||| ||||||||||||||    
T  8970072 attggtgttgtggtgagagataatgaaggtgttgtcgttggtgttagtttctagcaagtcttttcattaccggatttaaaggttgcagaagctttagcta 8970171  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatcaaca 214  Q
    | || || | |||  ||||| |||||||||| |||||||| ||||||||| |||||||| |||||||| |||| |||||  |||  |||||||| |||||    
T  8970172 tacggaagagtttggaatttgcaaaagacatgtcttttctgaatcttatagcagaatcaaatgcttctgatgtggttttagcgttgaatgctcaccaaca 8970271  T
Q  215 atctcccacctat 227  Q
    |||||||| ||||    
T  8970272 atctcccaactat 8970284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 38311885 - 38312056
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    ||||||||||| || |||||| |||||||| ||||  ||| |||||||||  |  || |||||||||||  || |||| | || ||||||||||||||||    
T  38311885 attggtgttgttgtaagagattatgaaggtattgtggttgctgctagttgttgtcaagtcttttcattaccagattcaaaggtaggagaagctttagcta 38311984  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatat---cttttctcaatcttatatcagaatcagatgcttcta 186  Q
    |||| ||    || |||||| |||||||||| |   ||||| | ||||||||| ||||||||||||||||||    
T  38311985 tgcggaaggggttgaaatttgcaaaagacatgttttctttttttaatcttatagcagaatcagatgcttcta 38312056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 2538055 - 2537839
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaa----aagtttcagaagttggagaagcttta 113  Q
    |||| ||||| ||||||||||||||| ||||||||  ||| || ||||||| |  |||||||||||||||     |  || ||| |||| ||||| ||||    
T  2538055 attgatgttgcggtgagagataatgacggtgttgtagttggtgttagttgctggcaaatcttttcattaattgccatatttagatgttgcagaagtttta 2537956  T
Q  114 gctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacg--taatgctcatc 210  Q
     |||||| |||   ||| ||||||   |||||||| |||||||| |||||| ||  |||||||||||||||| |||| || ||| ||   ||||||||||    
T  2537955 tctatgcaaaagggtttgaaatttgtgaaagacatgtcttttctgaatcttttagtagaatcagatgcttctaatgtggtcttggcgctgaatgctcatc 2537856  T
Q  211 aacaatctcccacctat 227  Q
    ||| |||| ||||||||    
T  2537855 aacgatcttccacctat 2537839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 43542193 - 43542398
Alignment:
Q  25 ttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagctatgcgaaa 124  Q
    |||| |||||||||||||||||||||||| ||| ||||||||   |  ||||||||||||||  || |||||| |||| |||||||||||||||||| ||    
T  43542193 ttgttgtgagagataatgaaggtgttgtcgttggtgctagtttttggcaaatcttttcattaccagattcagaggttgcagaagctttagctatgcggaa 43542292  T
Q  125 caatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatcaacaatctccc 221  Q
       |||  | ||| | |||||||| |||||||| ||||||||| ||||||||||||||||| |||| |||||  |||  |||||||| ||||||||||||    
T  43542293 gggtttggagtttgcgaaagacatgtcttttctgaatcttatagcagaatcagatgcttctaatgtggttttagcgttgaatgctcaccaacaatctccc 43542392  T
Q  222 acctat 227  Q
    | ||||    
T  43542393 aactat 43542398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 31438540 - 31438708
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    ||||||||||  ||||||||||| |||||||||||| ||| |||||||||| || || | |||||||||  |  |||| | ||   | ||||||||||||    
T  31438540 attggtgttgcagtgagagataacgaaggtgttgtcgttgctgctagttgctgacaagtattttcattactaaattcataggtaccaaaagctttagcta 31438639  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttcta 186  Q
    |||| ||    ||  ||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||    
T  31438640 tgcggaaggggttgcaatttgcaaaagacatatcttttctaaatcttatattagaatcatatgcttcta 31438708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 9438596 - 9438525
Alignment:
Q  159 aatcttatatcagaatcagatgcttcta-tgttgttttgacgt--aatgctcatcaacaatctcccacctat 227  Q
    ||||||||| |||||||||||| ||||| ||| ||||||||||  ||||||||||||||| ||||| |||||    
T  9438596 aatcttatagcagaatcagatgtttctaatgtggttttgacgtttaatgctcatcaacaacctccctcctat 9438525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 15262507 - 15262473
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgt 52  Q
    |||||||||| ||||||||||||||||||||||||    
T  15262507 attggtgttgcggtgagagataatgaaggtgttgt 15262473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 32675484 - 32675533
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttg 67  Q
    |||||||||||| ||||||||||| ||||||||| | ||| |||||||||    
T  32675484 attggtgttgtgttgagagataataaaggtgttgaccttgctgctagttg 32675533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 19625105 - 19624947
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    ||||||||| |||||||||||||||||||||||||||||| | |||||| || | |||  |||||||||  || |||||| |||| ||||| ||||||||    
T  19625105 attggtgttttggtgagagataatgaaggtgttgtcattgctactagttaccaacaaaatttttcattatcagattcagaggttgcagaagatttagcta 19625006  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatca 176  Q
    |||  || | ||| ||||||   |||||||| |||||||| ||||||||| ||||||||    
T  19625005 tgcagaagagtttcaaatttttgaaagacatgtcttttctgaatcttataacagaatca 19624947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 19646250 - 19646085
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| | || || | ||||  |||  || |||||| |||| ||||| ||||||||    
T  19646250 attggtgttgtggtgagagataatgaaggtgttgtcattgctgctagttactgacaagtttttttcttaccagattcagaggttgcagaagatttagcta 19646151  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgctt 183  Q
    | || || |||||  |||||   |||||||| |||||| | ||||||||| |||||||| ||||||    
T  19646150 tacggaagaatttggaatttttgaaagacatgtcttttgtgaatcttatagcagaatcaaatgctt 19646085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 1661653 - 1661441
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    |||| |||||| || ||| |||||||| ||| |  | ||| |||||||||| ||  | |||||||||||  |  |||||| |||| |||||| || ||||    
T  1661653 attgatgttgtagtaagaaataatgaaagtgatacccttgctgctagttgctgactagtcttttcattaccaaattcagaggttgcagaagccttggcta 1661554  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatcaaca 214  Q
    |||| ||   ||| |||||| ||||| |||| |||||| | ||||| ||| ||||||||||||||||| |||| || ||  |||  |||||||||||| |    
T  1661553 tgcggaagggtttgaaatttgcaaaatacatctcttttttgaatctcatagcagaatcagatgcttctaatgtggtcttagcgttgaatgctcatcaata 1661454  T
Q  215 atctcccacctat 227  Q
    |||| ||||||||    
T  1661453 atcttccacctat 1661441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 8085908 - 8085962
Alignment:
Q  132 aaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttcta 186  Q
    |||||| ||||||||||||||||| | |||||||||  ||||||||||| |||||    
T  8085908 aaatttgcaaaagacatatcttttttgaatcttataatagaatcagatgtttcta 8085962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 227
Target Start/End: Complemental strand, 25616623 - 25616423
Alignment:
Q  30 gtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagctatgcgaaacaatt 129  Q
    |||||||||||||||||||||||| ||| |||||| | | |  || |||||||||||  || |||||| |||| ||| |||||||||||||| ||   ||    
T  25616623 gtgagagataatgaaggtgttgtccttggtgctagctcctggcaagtcttttcattaccagattcagaggttgcagaggctttagctatgcggaagggtt 25616524  T
Q  130 taaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatcaacaatctcccaccta 226  Q
    |  ||||| |||||||||| |||||| | ||||||||| ||||||||| ||||||| |||| |||||  |||  |||||| | ||||||||||||| |||    
T  25616523 tggaatttgcaaaagacatgtcttttttgaatcttatagcagaatcagttgcttctaatgtggttttagcgttgaatgctaaccaacaatctcccaacta 25616424  T
Q  227 t 227  Q
    |    
T  25616423 t 25616423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 11790813 - 11790645
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    |||||||||| |||||||||||||||||||||| || ||| |||||||| | |  || |||||||||||  || |||||| |||| |||| ||| |||||    
T  11790813 attggtgttgcggtgagagataatgaaggtgttatcgttggtgctagtttctggcaagtcttttcattactagattcagaggttgcagaaacttaagcta 11790714  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttcta 186  Q
    || | || | |||  ||||| | |||| ||  |||||||| ||||||||| |||||||||| |||||||    
T  11790713 tgtggaagagtttggaatttgctaaaggcaggtcttttctgaatcttatagcagaatcagacgcttcta 11790645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 9112105 - 9112002
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||||||  |  || || ||||||||  || ||| || || | ||||||||||||||    
T  9112105 attggtgttgttgtgagagataatgaaggtgttgtcgttgctgctagttgttggcaagtcctttcattactagattcggatgtagcagaagctttagcta 9112006  T
Q  118 tgcg 121  Q
    ||||    
T  9112005 tgcg 9112002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 14069208 - 14069159
Alignment:
Q  17 cattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagtt 66  Q
    |||||| ||||| |||||||||||||||||||||||| ||| || |||||    
T  14069208 cattggggttgttgtgagagataatgaaggtgttgtcgttggtgttagtt 14069159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 14379236 - 14379187
Alignment:
Q  17 cattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagtt 66  Q
    |||||| ||||| |||||||||||||||||||||||| ||| || |||||    
T  14379236 cattggggttgttgtgagagataatgaaggtgttgtcgttggtgttagtt 14379187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 16055037 - 16055193
Alignment:
Q  31 tgagagataatg-aaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagctatgcgaaacaatt 129  Q
    |||||||||||| ||||||||||| |||  ||||||||| |  || |||||||||||  || |||||| |||| |||||||||| |||||||||| | ||    
T  16055037 tgagagataatggaaggtgttgtcgttgtcgctagttgctggcaagtcttttcattatcagattcagaggttgcagaagctttaactatgcgaaagagtt 16055136  T
Q  130 taaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttcta 186  Q
    | || ||| | | | ||||  ||||| | ||||||||| ||||||||||||||||||    
T  16055137 tgaagtttgcgataaacatgacttttttgaatcttatagcagaatcagatgcttcta 16055193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 32401941 - 32401805
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    |||||||||||||||||||||||||||||||||||| ||  || |||||   |  || |||||||||||  || |||||| |||| |||||| ||| |||    
T  32401941 attggtgttgtggtgagagataatgaaggtgttgtccttagtgttagttcttggcaagtcttttcattaccagattcagaggttgtagaagccttaacta 32401842  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatatcttt 154  Q
    |||||||   |||  ||||| |||||||||| |||||    
T  32401841 tgcgaaagggtttggaatttgcaaaagacatgtcttt 32401805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 4719272 - 4719220
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccg 70  Q
    ||||||||||||| |||||||||||||| ||||||||||  ||||||||||||    
T  4719272 attggtgttgtggcgagagataatgaagatgttgtcatttgtgctagttgccg 4719220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 27214301 - 27214133
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    |||||||||||||| ||||||||||||||||||||| | | |||||| ||| |  || ||||||| | |  ||  ||||| |||| ||||||||||| ||    
T  27214301 attggtgttgtggtaagagataatgaaggtgttgtcgtagctgctagctgctggaaagtcttttcttgactagactcagaggttgcagaagctttagtta 27214202  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttcta 186  Q
    |||| ||   |||  | |||   |||||||| | |||| | ||||||||| ||||||||||||||||||    
T  27214201 tgcggaagggtttggagtttgtgaaagacatgtgttttatgaatcttatagcagaatcagatgcttcta 27214133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 15908281 - 15908194
Alignment:
Q  33 agagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagctatgc 120  Q
    |||||||||||||||||||||  ||  ||||||||  || ||||||||||||||  || |||| | |||| | |||||||||||||||    
T  15908281 agagataatgaaggtgttgtcgctgccgctagttgttgacaaatcttttcattaccaggttcataggttgcaaaagctttagctatgc 15908194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 4719139 - 4719059
Alignment:
Q  150 tcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatcaacaatctcccacctat 227  Q
    |||||||| ||||||||| ||||||||||||||||| |||| || ||||  |  |||| ||||||||||||| ||||||||    
T  4719139 tcttttctgaatcttatagcagaatcagatgcttctaatgtagtattgagattgaatgttcatcaacaatcttccacctat 4719059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 44904 - 44804
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    |||||||||||||||||||||||||||| ||||||||||| | |||||| |  | || |||||||||||  || |||||| |||| ||||||| || |||    
T  44904 attggtgttgtggtgagagataatgaagatgttgtcattgct-ctagttcctaacaagtcttttcattaccagattcagaggttgcagaagctctaacta 44806  T
Q  118 tg 119  Q
    ||    
T  44805 tg 44804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 17538815 - 17538917
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    |||| |||||||||||||||| |||||||||||||| ||| ||| |||| | || || |||||| ||||  || || ||| |||| | ||||||||||||    
T  17538815 attgatgttgtggtgagagatgatgaaggtgttgtcgttgctgcaagttcctgacaagtctttttattaccagatttagaggttgcaaaagctttagcta 17538914  T
Q  118 tgc 120  Q
    |||    
T  17538915 tgc 17538917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 26024645 - 26024850
Alignment:
Q  18 attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagcta 117  Q
    |||||||||||  ||||||||||||||||||||||| ||| || | ||| | |  || ||| |||||||  || |||||| |||  | ||||||||||||    
T  26024645 attggtgttgttttgagagataatgaaggtgttgtcgttggtgttggttcctggcaagtctcttcattaccagattcagaggttatataagctttagcta 26024744  T
Q  118 tgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatcaaca 214  Q
    ||   ||   |||  ||||| | |||||  | |||||||| ||||||||| ||||||||||||||||| |||| |||||  |||  |||||||| |||||    
T  26024745 tgtagaagggtttggaatttgcgaaagatgtgtcttttctgaatcttatagcagaatcagatgcttctaatgtggttttagcgttgaatgctcaccaaca 26024844  T
Q  215 atctcc 220  Q
    ||||||    
T  26024845 atctcc 26024850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 24310517 - 24310436
Alignment:
Q  28 tggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagc 109  Q
    ||||||||||||| |||||||||||| |||||| |||||||    || ||||||||||| ||| || |||||||| ||||||    
T  24310517 tggtgagagataacgaaggtgttgtcgttgatgttagttgctcgcaagtcttttcattataagatttagaagttgcagaagc 24310436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 10066 - 10022
Alignment:
Q  22 gtgttgtggtgagagataatgaaggtgttgtcattgatgctagtt 66  Q
    |||||||||||||||||||||||||||||||| | | ||||||||    
T  10066 gtgttgtggtgagagataatgaaggtgttgtcgtcggtgctagtt 10022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University