View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280_low_26 (Length: 237)
Name: NF4280_low_26
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 9617792 - 9617577
Alignment:
| Q |
5 |
taatgtttccggcacttgctgctttaacatatgaaattgtcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatatcatcgaa |
104 |
Q |
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| T |
9617792 |
taatgcttccggcactttctgctttaacatatgaaattgtcaaattctctaatatgggacacccatagataagtttatttaaatcctccatatcatcgaa |
9617693 |
T |
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| Q |
105 |
acgaacatccatcagatccagggtcttaagtaaaggaagatgaacagagcaatgagtcatagtggctacacgtaaactccacaaatggagaatcacaagt |
204 |
Q |
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| T |
9617692 |
acggacattcatcatatccagggtcttaagtaaaggaagatgaacagaacaatgagtcatagtggctacacgtaaactcca-aaatggagaatcacaagt |
9617594 |
T |
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| Q |
205 |
gtttcgcaggaggagaa |
221 |
Q |
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| T |
9617593 |
gtttcgcaggaggagaa |
9617577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 19805838 - 19805768
Alignment:
| Q |
27 |
tttaacatatgaaattgtcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatat |
97 |
Q |
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| T |
19805838 |
tttaacatatctagttttcaaattctccaatatgggacacccagaaagaagtttcatgaaatcctcgatat |
19805768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 32242700 - 32242836
Alignment:
| Q |
31 |
acatatgaaattgtcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatatcatcgaaacgaacatccatcagatccagggtct |
130 |
Q |
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| T |
32242700 |
acatatgcaattttcaaatcctctaacatgggacacccagatataagtttctttaaatcttccatatcatccaaatgaacatcaatcatatgtagtgttt |
32242799 |
T |
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| Q |
131 |
taagtaaaggaagatgaacagagcaatgagtcatagt |
167 |
Q |
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| T |
32242800 |
taagtgaaggaagatgaacagaataatgagacatagt |
32242836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 32225949 - 32225827
Alignment:
| Q |
44 |
tcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatatcat-cgaaacgaacatccatcagatccagggtcttaagtaaaggaa |
142 |
Q |
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| T |
32225949 |
tcaaatcctctaatatgggacacccagatataagtttctttaaatcctcgatataatccaaaacgaacaacaatcagatgtaacgttttaagtaaaggaa |
32225850 |
T |
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| Q |
143 |
gatgaacagagcaatgagtcata |
165 |
Q |
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| T |
32225849 |
gatgaacagaacaatgagacata |
32225827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 166
Target Start/End: Original strand, 32225349 - 32225484
Alignment:
| Q |
31 |
acatatgaaattgtcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatatcatcgaaacgaacatccatcagatccagggtct |
130 |
Q |
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|||||||| || |||||| ||||||||||||| || || | ||||||||||| |||||||| |||||||| ||| |||| || ||||||| | | | |
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| T |
32225349 |
acatatgatgttttcaaatcctctaatatgggaaactcagatataagtttctttaaatcctcgatatcatccaaatgaacgtcaatcagatgtaactttt |
32225448 |
T |
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| Q |
131 |
taagtaaaggaagatgaacagagcaatgagtcatag |
166 |
Q |
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| T |
32225449 |
taagtaaaggaagatgaaaagaacaatgagacatag |
32225484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 16259105 - 16259231
Alignment:
| Q |
31 |
acatatgaaattgtcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatatcatcgaaacgaacatccatcagatccagggtct |
130 |
Q |
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||||||| | || |||||| |||||| ||||||| ||| | ||||||||||| |||||||| |||||||| ||||||||||| |||||| || || | |
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| T |
16259105 |
acatatgcagttttcaaatcctctaacatgggactcccggatataagtttctttaaatcctcgatatcatcaaaacgaacatcgctcagatgaagcgttt |
16259204 |
T |
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| Q |
131 |
taagtaaaggaagatgaacagagcaat |
157 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
16259205 |
taagtaaaggaagatgaacagaacaat |
16259231 |
T |
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