View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4280_low_27 (Length: 231)

Name: NF4280_low_27
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4280_low_27
NF4280_low_27
[»] chr2 (4 HSPs)
chr2 (1-112)||(8019772-8019883)
chr2 (112-216)||(8019915-8020019)
chr2 (113-208)||(22391284-22391379)
chr2 (15-88)||(22391139-22391209)
[»] chr3 (42 HSPs)
chr3 (113-216)||(28081898-28082001)
chr3 (113-216)||(28132105-28132208)
chr3 (113-216)||(28183922-28184025)
chr3 (113-216)||(28159358-28159461)
chr3 (113-216)||(28510668-28510771)
chr3 (113-215)||(17746167-17746269)
chr3 (113-215)||(19047487-19047589)
chr3 (113-216)||(28002333-28002436)
chr3 (113-215)||(27392230-27392332)
chr3 (113-216)||(28147889-28147992)
chr3 (113-208)||(12146179-12146274)
chr3 (113-213)||(11418886-11418986)
chr3 (113-216)||(27918527-27918630)
chr3 (113-216)||(27975507-27975610)
chr3 (113-207)||(27461051-27461142)
chr3 (113-216)||(28481496-28481599)
chr3 (113-213)||(18026466-18026566)
chr3 (113-215)||(27347569-27347671)
chr3 (113-197)||(26114998-26115082)
chr3 (113-197)||(26142310-26142394)
chr3 (113-197)||(26210106-26210190)
chr3 (113-208)||(27376362-27376457)
chr3 (113-216)||(28035583-28035686)
chr3 (166-216)||(28053683-28053733)
chr3 (166-216)||(28064108-28064158)
chr3 (24-88)||(28081765-28081826)
chr3 (113-197)||(26180615-26180699)
chr3 (118-197)||(26237350-26237429)
chr3 (18-87)||(27918388-27918454)
chr3 (18-88)||(18026641-18026708)
chr3 (113-197)||(26131578-26131662)
chr3 (15-88)||(28147744-28147814)
chr3 (16-88)||(28131961-28132030)
chr3 (113-163)||(28481909-28481959)
chr3 (15-88)||(17746344-17746414)
chr3 (15-88)||(19047664-19047734)
chr3 (24-81)||(26180769-26180823)
chr3 (15-88)||(27461214-27461284)
chr3 (15-88)||(27975362-27975432)
chr3 (24-79)||(26210262-26210314)
chr3 (24-79)||(26237506-26237558)
chr3 (18-88)||(11418747-11418814)
[»] scaffold0043 (1 HSPs)
scaffold0043 (108-208)||(54728-54828)
[»] scaffold0257 (1 HSPs)
scaffold0257 (113-216)||(17484-17587)
[»] chr7 (2 HSPs)
chr7 (113-210)||(8693335-8693432)
chr7 (15-79)||(8693519-8693580)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 8019772 - 8019883
Alignment:
Q  1 ctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaaaacatgctttcc 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019772 ctcacttacttaagatgagaatcaaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaaaacatgctttcc 8019871  T
Q  101 aaagctaggaac 112  Q
    ||||||||||||    
T  8019872 aaagctaggaac 8019883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 8019915 - 8020019
Alignment:
Q  112 catgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019915 catgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtg 8020014  T
Q  212 atgat 216  Q
    |||||    
T  8020015 atgat 8020019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 22391284 - 22391379
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaag 208  Q
    ||||||||||||||||||||||||||||||||||||||||| |   |||  | ||||| ||||||||| |||||||||||||||||||| ||||||    
T  22391284 atgtctttccaatctccatatgtaaagagcttcctgagctagaggctctagtgataagtgaagcatataagctagaggaaatatttgtatgtgaag 22391379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 22391139 - 22391209
Alignment:
Q  15 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 88  Q
    |||||||| |||||||||||||| || ||| ||||||||||   ||||||||||||| ||||||||||||||||    
T  22391139 atgagaattgaagaatgcaaagaattgaagcatattattga---agatgatttggagaataaaaaatcctcaaa 22391209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 28081898 - 28082001
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  28081898 atgtctttccaatctccgtatataaagagcttcctgagctaaattatctgatcataagagaagcagatgagttagaggaaatatttgtaagcgaaggtga 28081997  T
Q  213 tgat 216  Q
    ||||    
T  28081998 tgat 28082001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 28132105 - 28132208
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  28132105 atgtctttccaatctccgtatgtaaagagcttcctgagctatattatctgatcataagagaagcagacgagttagaggaaatatttgtaagtgaaggtga 28132204  T
Q  213 tgat 216  Q
    ||||    
T  28132205 tgat 28132208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 28183922 - 28184025
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  28183922 atgtgtttccaatctccatatgtaaagagcttcctgagctaaatgttctgatgataagagaagcagatgagctggaggaaatatttgtaagtgaaggtga 28184021  T
Q  213 tgat 216  Q
    ||||    
T  28184022 tgat 28184025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 28159358 - 28159461
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||  |||||| ||||||||| || |||||||||||||||||||||||| |||||||||    
T  28159358 atgtatttccaatctccatatgtaaagagcttcctgagctaaatgttctgatgataagagaatcagatgagctagaggaaatatttgtaattgaaggtga 28159457  T
Q  213 tgat 216  Q
    ||||    
T  28159458 tgat 28159461  T

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Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 28510771 - 28510668
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |  ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  28510771 atgtctttccaatctccatatctaaagagcttccagagctaattgttctgatcataagagaagcagatgagttagaggaaatatttgtaagtgaaggtga 28510672  T
Q  213 tgat 216  Q
    ||||    
T  28510671 tgat 28510668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 17746269 - 17746167
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    ||||||||||||||||||||||||||||||||||||||||| |   ||| || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  17746269 atgtctttccaatctccatatgtaaagagcttcctgagctagagggtctaatgataagagaagcatatgagctagaggaaatatttggaagtgaaggtga 17746170  T
Q  213 tga 215  Q
    |||    
T  17746169 tga 17746167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 19047589 - 19047487
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    ||||||||||||||||||||||||||||||||||||||||| |   ||| || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  19047589 atgtctttccaatctccatatgtaaagagcttcctgagctagagggtctaatgataagagaagcatatgagctagaggaaatatttggaagtgaaggtga 19047490  T
Q  213 tga 215  Q
    |||    
T  19047489 tga 19047487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 28002333 - 28002436
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| | ||| ||||||||||||||| ||||||||||||    
T  28002333 atgtgtttccaatctccatatgtaaagagcttcctgagctaaatgttctgaccataagagaagcagacgaggtagaggaaatatttggaagtgaaggtga 28002432  T
Q  213 tgat 216  Q
    ||||    
T  28002433 tgat 28002436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 27392332 - 27392230
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    |||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||| | |||| |||    
T  27392332 atgtgtttccaatctccatatgtaaagagcttcctgagctaaaggttctgatcataagagaagcagatgagctagaggaaatatttgtatgcgaagttga 27392233  T
Q  213 tga 215  Q
    |||    
T  27392232 tga 27392230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 28147889 - 28147992
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    |||| |||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||| ||||| |||||||||||||||||||||||  |||    
T  28147889 atgtgtttccaatctccatatctaaagagcttcctgagctaaaggttctgatcataagagaagcagatgagttagaggaaatatttgtaagtgaatttga 28147988  T
Q  213 tgat 216  Q
    ||||    
T  28147989 tgat 28147992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 12146179 - 12146274
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaag 208  Q
    |||| |||||||||||||||||||||||||||||||||||| | | ||| || |||||||||||| ||||||||||||||||||||||| ||||||    
T  12146179 atgtgtttccaatctccatatgtaaagagcttcctgagctacagtttctaattataagagaagcaaatgagctagaggaaatatttgtatgtgaag 12146274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 11418886 - 11418986
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    |||| |||||||||||| | ||||||||||||||||||||| ||  |||||| |||||||| ||| |||||||||||||||||||||||||||||| |||    
T  11418886 atgtttttccaatctccctgtgtaaagagcttcctgagctatatgttctgatgataagagacgcagatgagctagaggaaatatttgtaagtgaagatga 11418985  T
Q  213 t 213  Q
    |    
T  11418986 t 11418986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 27918527 - 27918630
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    |||||||||||||||||||||||||||| |||||||||||||| | |||  | |||||||||||| ||||||| || |||||||||| || |||||||||    
T  27918527 atgtctttccaatctccatatgtaaagaccttcctgagctaaagtgtctagtgataagagaagcagatgagctggatgaaatatttgcaaatgaaggtga 27918626  T
Q  213 tgat 216  Q
    ||||    
T  27918627 tgat 27918630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 27975507 - 27975610
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    |||| |||||||||||||||||||||||||||| ||||||| |   |||  | ||||||||||||  |||||||||||||||||||||||||||||||||    
T  27975507 atgtgtttccaatctccatatgtaaagagcttcttgagctagaggttctcttgataagagaagcagctgagctagaggaaatatttgtaagtgaaggtga 27975606  T
Q  213 tgat 216  Q
    ||||    
T  27975607 tgat 27975610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 27461142 - 27461051
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaa 207  Q
    ||||||||||||| ||||||||||||||||||||||||||| |   ||| |||||||||||||||   |||||||||||||||||||||||||||    
T  27461142 atgtctttccaatgtccatatgtaaagagcttcctgagctagaggttctaatcataagagaagca---gagctagaggaaatatttgtaagtgaa 27461051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 28481599 - 28481496
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    |||| |||||||||||||||| ||||||||||||  ||||||||  ||| ||||||||||||||| | ||| | ||||||||||||| ||||||||||||    
T  28481599 atgtgtttccaatctccatatctaaagagcttccaaagctaaatgttctcatcataagagaagcagacgagttcgaggaaatatttggaagtgaaggtga 28481500  T
Q  213 tgat 216  Q
    ||||    
T  28481499 tgat 28481496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 18026566 - 18026466
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    ||||||||||||||||||||| |||||||||||||||||||||   | | ||||||  ||||||| |  |||||||||||||||||||| |||||| |||    
T  18026566 atgtctttccaatctccatatataaagagcttcctgagctaaaggttataatcatagtagaagcagagaagctagaggaaatatttgtatgtgaagttga 18026467  T
Q  213 t 213  Q
    |    
T  18026466 t 18026466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 215
Target Start/End: Original strand, 27347569 - 27347671
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    |||| |||||||||||||||||||||||||||||||||||| |   ||| |||||||||||| || | ||  | ||||||||||||||| || |||||||    
T  27347569 atgtgtttccaatctccatatgtaaagagcttcctgagctagaggctctaatcataagagaatcagaagaattggaggaaatatttgtatgtaaaggtga 27347668  T
Q  213 tga 215  Q
    |||    
T  27347669 tga 27347671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 26115082 - 26114998
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 197  Q
    ||||||||||| ||||||| |||||||||||||||||||||||   | |||| |||||||||||| ||||| |||| ||||||||    
T  26115082 atgtctttccagtctccatttgtaaagagcttcctgagctaaaggttatgataataagagaagcaaatgagttagaagaaatatt 26114998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 26142394 - 26142310
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 197  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||   | || | |||||||||||| |||||||||||||||||||    
T  26142394 atgtctttccaatctccatttgtaaagagtttcctaagctaaaggctgtgttgataagagaagcaaatgagctagaggaaatatt 26142310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 26210190 - 26210106
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 197  Q
    |||| |||||| ||||||| ||||||||| ||||||||||||||  | |||| |||||||||||| ||||| |||||||||||||    
T  26210190 atgtgtttccagtctccatttgtaaagagtttcctgagctaaatgttatgataataagagaagcaaatgagttagaggaaatatt 26210106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 27376362 - 27376457
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaag 208  Q
    ||||||||||||||||||||||| ||||||||||||||||| |   |||  | |||| |||| || || |||||||||||||||||||| ||||||    
T  27376362 atgtctttccaatctccatatgtgaagagcttcctgagctagagagtctagtgataaaagaatcagataagctagaggaaatatttgtatgtgaag 27376457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 28035583 - 28035686
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    ||||||||||||||||||||||||||||||||||  || || |   ||| || |||||||||||| || || | || |||||||||| ||||||||||||    
T  28035583 atgtctttccaatctccatatgtaaagagcttcccaagttagaagctctaatgataagagaagcagataagatggaagaaatatttgcaagtgaaggtga 28035682  T
Q  213 tgat 216  Q
    ||||    
T  28035683 tgat 28035686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 28053683 - 28053733
Alignment:
Q  166 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgat 216  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  28053683 ataagagaagcagatgagctagaggaaatatttgtaagtgaaagtgatgat 28053733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 28064108 - 28064158
Alignment:
Q  166 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgat 216  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  28064108 ataagagaagcagatgagctagaggaaatatttgtaagtgaaagtgatgat 28064158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 28081765 - 28081826
Alignment:
Q  24 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 88  Q
    ||||||||||||||||||||| ||||||||||   ||||||||||||| ||||||||||||||||    
T  28081765 gaagaatgcaaagagttaaagcatattattga---agatgatttggagaataaaaaatcctcaaa 28081826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 26180699 - 26180615
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 197  Q
    |||| |||||| ||||||| ||||||||| |||||||||||||   | || | |||||||||||| |||||||||||||||||||    
T  26180699 atgtgtttccagtctccatttgtaaagagtttcctgagctaaaggttatgttgataagagaagcaaatgagctagaggaaatatt 26180615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 26237429 - 26237350
Alignment:
Q  118 tttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 197  Q
    |||||| ||||||| ||||||||| |||||||||||||   | || |||||||||||||| ||||| |||||||||||||    
T  26237429 tttccagtctccatttgtaaagagtttcctgagctaaaggttatgttcataagagaagcaaatgagttagaggaaatatt 26237350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 27918388 - 27918454
Alignment:
Q  18 agaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaa 87  Q
    ||||| ||||||||||||||||| ||| ||||||||||   ||||||||||||| |||||||||||||||    
T  27918388 agaattgaagaatgcaaagagttgaagtatattattga---agatgatttggagaataaaaaatcctcaa 27918454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 18026708 - 18026641
Alignment:
Q  18 agaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 88  Q
    ||||| ||||| ||||||||||| ||| |||||||||||   |||||||||||| ||||||||||||||||    
T  18026708 agaattgaagattgcaaagagttgaagcatattattgaa---gatgatttggagaataaaaaatcctcaaa 18026641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 26131662 - 26131578
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 197  Q
    ||||||||||| ||||||| ||||||||| ||||| |||||||   | |||| ||||| |||||| |||||||||||| ||||||    
T  26131662 atgtctttccagtctccatttgtaaagagtttcctaagctaaaggttatgatgataagtgaagcaaatgagctagagggaatatt 26131578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 28147744 - 28147814
Alignment:
Q  15 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 88  Q
    |||||||| ||||||||||| ||||| | | |||||||||||   |||||||||||| ||||||||||||||||    
T  28147744 atgagaattgaagaatgcaatgagttgaggcatattattgaa---gatgatttggagaataaaaaatcctcaaa 28147814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 28131961 - 28132030
Alignment:
Q  16 tgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 88  Q
    ||||||| |||||||||||||| || ||| |||| ||||||   |||||||||||| ||||||||||||||||    
T  28131961 tgagaattgaagaatgcaaagaattgaagcatataattgaa---gatgatttggagaataaaaaatcctcaaa 28132030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 28481959 - 28481909
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctga 163  Q
    |||| ||||||||||||||||||||||| |||||||||||| || ||||||    
T  28481959 atgtgtttccaatctccatatgtaaagaccttcctgagctatatgatctga 28481909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 17746414 - 17746344
Alignment:
Q  15 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 88  Q
    |||||||| ||||||||||||||||| |   ||||| ||||   ||||||||||||| ||||||||||||||||    
T  17746414 atgagaattgaagaatgcaaagagttgacacatatttttga---agatgatttggagaataaaaaatcctcaaa 17746344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 19047734 - 19047664
Alignment:
Q  15 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 88  Q
    |||||||| ||||||||||||||||| |   ||||| ||||   ||||||||||||| ||||||||||||||||    
T  19047734 atgagaattgaagaatgcaaagagttgacacatatttttga---agatgatttggagaataaaaaatcctcaaa 19047664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 26180823 - 26180769
Alignment:
Q  24 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaat 81  Q
    ||||||||||||||||| ||| |||| ||||||   ||||||||||||||||||||||    
T  26180823 gaagaatgcaaagagttgaagcatatcattgaa---gatgatttggaggataaaaaat 26180769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 27461284 - 27461214
Alignment:
Q  15 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 88  Q
    |||||||| ||||||||||||||||| ||| |||| |||||||   ||||||||||| | ||||| ||||||||    
T  27461284 atgagaattgaagaatgcaaagagttgaagcatataattgaat---atgatttggagaacaaaaactcctcaaa 27461214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 27975362 - 27975432
Alignment:
Q  15 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 88  Q
    |||||||| ||||| ||||||||||| ||| |||| |||||||   ||||||||||| ||| ||||||||||||    
T  27975362 atgagaattgaagagtgcaaagagttgaagcatataattgaat---atgatttggagaatagaaaatcctcaaa 27975432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 26210314 - 26210262
Alignment:
Q  24 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 79  Q
    ||||||||||||||||| ||| |||| ||||||   ||||||||||||||||||||    
T  26210314 gaagaatgcaaagagttgaagcatatcattgaa---gatgatttggaggataaaaa 26210262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 26237558 - 26237506
Alignment:
Q  24 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 79  Q
    ||||||||||||||||| ||| |||| ||||||   ||||||||||||||||||||    
T  26237558 gaagaatgcaaagagttgaagcatatcattgaa---gatgatttggaggataaaaa 26237506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 11418747 - 11418814
Alignment:
Q  18 agaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 88  Q
    ||||| ||||||||||||||||| ||| |||| |||||   |||||| |||||| ||||||| ||||||||    
T  11418747 agaattgaagaatgcaaagagttgaagcatatgattga---agatgacttggagaataaaaattcctcaaa 11418814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 54828 - 54728
Alignment:
Q  108 ggaacatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaa 207  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  54828 ggaaaatgtctttccaatctccatatgtaaagagcttcctgagctagatgctctaatcataagagaagcacatgagctagaggaaatatttgtatgtgaa 54729  T
Q  208 g 208  Q
    |    
T  54728 g 54728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 17484 - 17587
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 212  Q
    |||| |||||||||||||||||||||||||||||||||||||| | |||  | |||||||||||| |||||||||||||||||| || ||||||||||||    
T  17484 atgtgtttccaatctccatatgtaaagagcttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtga 17583  T
Q  213 tgat 216  Q
    ||||    
T  17584 tgat 17587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 8693432 - 8693335
Alignment:
Q  113 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggt 210  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||  ||||||||||||||||||| ||||||| || |||||||||| ||||||||||    
T  8693432 atgtctttccagtctccatatgtaacgagcttcctgagctaaatgttctgatcataagagaagcagatgagctggatgaaatatttgcaagtgaaggt 8693335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 8693580 - 8693519
Alignment:
Q  15 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 79  Q
    |||||||| ||||||||||||||||| ||| ||||||||||   ||||||||||||| |||||||    
T  8693580 atgagaattgaagaatgcaaagagttgaagcatattattga---agatgatttggagaataaaaa 8693519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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